Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1082 ATGATTTCAAGGGCCACATCTAGCTTCCAAAGTGGGTTAGTTCAGATGTTCCCTCATGACCCCATGGAATCAGGCTCATCAGCAGGTACTAGTTCCCTCCTCTTCAATTTGTCTATTATGAAGGACAAGCTTAGTGAGGTGCAGATCCTGGTTGATGTTATTCTCTCCCCAAATCAAAGCATACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACTTCAATGATGTTCACCTGCCAACAGATCATGGCTCTCACCACCCCTCCTACAGGTACTAATACATGCACCAACACCAAATTGCACCATCAGCAGAATAATAATAAGTTGCCTCATCACTCAAATAACTTTGGCACAAGTAGAAGTTTGCTTGGTAACATAGGCATAGATACTACTAGTGACCACATTAATCAGGGTTTATTTTCTAGTACTGATCAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACGCTGATAATAATAGCAATATTGGTAATAAGGTTGCAATTAGTAATGAAGAAGAAGGGTATAGATCAGCTGCAAAGAATATGAATAGTGATATAATTGAATTGGATGCTTCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTATGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAGTGCTGCTTTGAGTAACCCAATAAAAAAGAACAAGGAAGAGTGTTTGATGCCAATTACGAGATATTCGTGTCCTGAAGAAGGGTGTAGGTGGAACAAGAGGCATGCCAAGTTCCAGCCACTGAAGTCGATGGTTTGTGCCAAGAACCATTACAAGAGAAGCCATTGCCCCAAAATGTACATGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTCTCTGATCTCAGGACACATGAGAAGCACTGTGGAGATCTAAAGTGGCAGTGCTCTTGTGGCACCTCCTTTTCTAGAAAAGACAAGCTTATGGGTCATGTCGCTTTGTTCCTCGGACACCAACCAGCAGCAGCAGCAGCCAACAACAACAATGCTCTCTCTTACTCAGCCTCCTCAGGCAAATATATTATAGAGCACCACACATTGCAATTGCAGATTGATGGTAGCTCAAGATGA 1176 0.4371 MISRATSSFQSGLVQMFPHDPMESGSSAGTSSLLFNLSIMKDKLSEVQILVDVILSPNQSIPESTSMAISSMNSTIQEIIVTATSMMFTCQQIMALTTPPTGTNTCTNTKLHHQQNNNKLPHHSNNFGTSRSLLGNIGIDTTSDHINQGLFSSTDQSEALDWFSESYNADNNSNIGNKVAISNEEEGYRSAAKNMNSDIIELDASDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPIKKNKEECLMPITRYSCPEEGCRWNKRHAKFQPLKSMVCAKNHYKRSHCPKMYMCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFLGHQPAAAAANNNNALSYSASSGKYIIEHHTLQLQIDGSSR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1082 391 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 366 IPR044300 GO:0010044|GO:0010447
Aed1g1082 391 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Aed1g1082 391 SUPERFAMILY beta-beta-alpha zinc fingers 211 238 IPR036236 -
Aed1g1082 391 SMART c2h2final6 263 296 IPR013087 -
Aed1g1082 391 SMART c2h2final6 301 323 IPR013087 -
Aed1g1082 391 SMART c2h2final6 213 235 IPR013087 -
Aed1g1082 391 PANTHER OS08G0562300 PROTEIN 23 366 - -
Aed1g1082 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Aed1g1082 391 Gene3D Classic Zinc Finger 189 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1082 Aed-Chr1 10693853 10695028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1082 32 360 C2H2 Transcription Factor Family AT5G22890 48.246 2.01e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1082 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1082 - - gsj:114375424 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1082 1 10693853 10695028 Aed1g1082 1 10693853 10695028 ECH
Aed1g1082 1 10693853 10695028 Aed5g0586 5 4269437 4270657 PCT