Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1078 ATGGCGAAGGGCGCCGATTCCGACGAGTTCGTTGTTCTTTCCAGGGTTCGTACGGGTCTCAAGAGAGAGTTCGCATTCGCCATGAAGGCCCAATCTGAGATCTGCGGCGGTTCTCTCGGCCGTACTCGGGGCAGCAAGAACCGTGTCGAGGCGCCGGTTCAGCCCGCTTCCGCTCGGAAGAGGTCGAGGAAGTCCGAGGAGCCGAAAACCTTGGAGGATGCCATGAGCGAGGAAGAGGTCAAGAGCGACGTGGTGGATCTTCAGAGCGACGATGAACCAAAGAATAATAATCACGTGGGAGAATCAGAATCTGCGGCAATGCCGGTTTGTGAAGAGGAACCGATGTGTGACGTGGTGGTGGAAACTGCTAGCGGCGAAGAGGAACCGAAGATGTTGGAACCTGAACCTGTTATCAGAGAGGAGGAACCGAAGGTGTTGGGTGATGTTATCAATGAAGAGGAACCTGTTGTGGCCAAGACCTTGAGGGAAGAGGAACCTATTGTGGCTGAGACATTGAAGGAAGAGGTTGTGGATGAGATGGCACGGCAGTCCCTTTGTAAAGAGAAATCGGAGAAGGGTGTTTCGGAGGAGAAAGATTCTAATGGGGCAGCCCTACCTTTGGTTAATGACGATGATAAGGGGAAGAAGAAGAGAATGAAAAAGCGATTGGAGAGGCCTCAGTCTGAGAGAAGGTTCACGCGGTCGGTATTGAAGGTGAAATCTGAGGAAACAAATGACGGGGAACATATTGATGTGGCTGGAATTGATGGTGGTGTTAAGAGGGAAACTGAAACTGAGGCTTCGTTGTTAGTTACTACTCCTAGTTCGGTAAAATTTTCGAATACTGGGTCCAAGAAGAAGTTTCCTGCCAAGTTGAAGGATCTACTGGCTTCGGGGATTCTCGAGGGGCTGTCAGTGATGTACATGAAGGGAGTGAAGGCACGTTTGAAAGATGGAGAAAAGGGGCTTCAAGGAGTTATTCAAGACTCTGGTGTTTTGTGCTTTTGCAAGATTTGTAAGGGGGTTGAGGTTGTCACGCCCTCTGTGTTTGAGCTGCATGCTGGCAGTGCAAACAAGCGACCCCCTGAGTATACTTACCTCCATGATGGGTGTAGTGGAAAAACCCTCCGCGATGTCATGAATGCCTGCTGCTGCAGCTGTGATTCGCCATTAGAGTCCATGGATGAAGCCGTCCAAAAGCTCCTTGGTGACTTCACTATGAAGAAATCTTCCATCTGCTTCAACTGCAAAGGAGCATGCAAGGGTGTGTCAAGGCTAGTATGTGATTCATGCATAGCAAGCCCCCCTCAAACAGCTGTGGCTAGTAGCAAAAGTATTTCACAACCAGTTCAACCCAGAACACCAGAACCAGTTGTGATTCAAAAATCATTAGACAATGAGGTGCAGCCAAATTCATTAGACACTGTGATGCAGCCAAATTCATTAGACACTGTGATGCAGCCAATTTCATTAGACACTGGAATGCAGCCAAATTCATTAGATAATGGGATGAAGCCAAAATCGTTTAGCAATGGGATGAAGCACAGTGCATCTTGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGCTTGCACAAGTTGGTATTTGAAGCAGATGTTTTGCCAGATGGAACTGAACTAGCCTACTATGCTCATGGACAGAAATTGTTGGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAATGAGCAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTGCACATATACACATCTAATGGAATTTCACTGCATGAGTTGTCCATCTCTTTATCAAAAGATCATCGGAGGTTTTCCAACAATGACAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGGTGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTAGCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACATGATGTGAATGCTCTGGCAGCGGCTGGAAGGATTGCAGGACCTGATATTTTGGAACTGATGAACAAAAGATGCATTCGTGTTGTCAAAACTATAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCCCAATTTCAGTAAAAGCTTTGGTCCTCGCACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGAACATAACATGGAAAACCTAGAGGAATTGCCTGAAGGAAATTGGTTCTGTAGCAATAATTGTAGTCAAATTCATTCTGCTCTGATGGATCTGGTGGCTTGTAAGGAGAAGAATGTCCCAGATTCCCTTCTAAATTTGATTAAAAAGAAGCATGAAGAGAAGAGTTTAGAAACTGAAGCTGATCTTGATGTTAAATGGAGGGTTATGAACTGGAAATTAGATTCTGATTCTGTTGAAACTAGGAAATCGCTTTCAAAAGCTGTTGCCATTTTCCATGATAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCAACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGATTTTAGTGGAATTTACTGTGCAGTTCTTACTATCAATGGGGATATCGTGTCTGCTGGAGTATTTCGCGTCTTTGGGTCAGAAATAGCAGAGCTTCCATTGGTGGCGACAATTGCTGATCATCAAGGACAGGGTTATTTTCAGTGCTTGTTTTCTTGTATTGAGACGCTACTTGGATCTTTAAATGTGAAAAACCTTGTCCTACCGGCTGCGGACGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAGCTTCCTCAAGATGAGATAAACAAATATAAGAAATTTTATCGCATGATGATATTTCAAGGTACCTCAGTGTTACAGAAGCCTGTTCCTGCAGCACTCTGA 2970 0.4502 MAKGADSDEFVVLSRVRTGLKREFAFAMKAQSEICGGSLGRTRGSKNRVEAPVQPASARKRSRKSEEPKTLEDAMSEEEVKSDVVDLQSDDEPKNNNHVGESESAAMPVCEEEPMCDVVVETASGEEEPKMLEPEPVIREEEPKVLGDVINEEEPVVAKTLREEEPIVAETLKEEVVDEMARQSLCKEKSEKGVSEEKDSNGAALPLVNDDDKGKKKRMKKRLERPQSERRFTRSVLKVKSEETNDGEHIDVAGIDGGVKRETETEASLLVTTPSSVKFSNTGSKKKFPAKLKDLLASGILEGLSVMYMKGVKARLKDGEKGLQGVIQDSGVLCFCKICKGVEVVTPSVFELHAGSANKRPPEYTYLHDGCSGKTLRDVMNACCCSCDSPLESMDEAVQKLLGDFTMKKSSICFNCKGACKGVSRLVCDSCIASPPQTAVASSKSISQPVQPRTPEPVVIQKSLDNEVQPNSLDTVMQPNSLDTVMQPISLDTGMQPNSLDNGMKPKSFSNGMKHSASCGKSQGRLTRKDLRLHKLVFEADVLPDGTELAYYAHGQKLLVGYKKGYGIFCTCCNEQVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDHRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLACIPSGTWYCKYCQNVFQKDRHGQHDVNALAAAGRIAGPDILELMNKRCIRVVKTIEVDHGGCALCSRPNFSKSFGPRTVIICDQCEKEYHVGCLKEHNMENLEELPEGNWFCSNNCSQIHSALMDLVACKEKNVPDSLLNLIKKKHEEKSLETEADLDVKWRVMNWKLDSDSVETRKSLSKAVAIFHDRFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGIYCAVLTINGDIVSAGVFRVFGSEIAELPLVATIADHQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLPQDEINKYKKFYRMMIFQGTSVLQKPVPAAL 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1078 989 ProSitePatterns Zinc finger PHD-type signature. 629 668 IPR019786 -
Aed1g1078 989 MobiDBLite consensus disorder prediction 35 112 - -
Aed1g1078 989 SUPERFAMILY FYVE/PHD zinc finger 615 670 IPR011011 -
Aed1g1078 989 MobiDBLite consensus disorder prediction 57 98 - -
Aed1g1078 989 Gene3D - 814 983 - -
Aed1g1078 989 SUPERFAMILY FYVE/PHD zinc finger 712 772 IPR011011 -
Aed1g1078 989 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 874 959 IPR016181 -
Aed1g1078 989 MobiDBLite consensus disorder prediction 225 240 - -
Aed1g1078 989 MobiDBLite consensus disorder prediction 124 151 - -
Aed1g1078 989 CDD PHD1_AIRE 628 668 - -
Aed1g1078 989 MobiDBLite consensus disorder prediction 184 240 - -
Aed1g1078 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 692 IPR013083 -
Aed1g1078 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 775 IPR013083 -
Aed1g1078 989 MobiDBLite consensus disorder prediction 184 198 - -
Aed1g1078 989 Pfam Tify domain binding domain 561 609 IPR032308 -
Aed1g1078 989 Pfam Tify domain binding domain 325 383 IPR032308 -
Aed1g1078 989 ProSiteProfiles Zinc finger PHD-type profile. 626 671 IPR019787 -
Aed1g1078 989 SMART PHD_3 717 772 IPR001965 -
Aed1g1078 989 SMART PHD_3 628 669 IPR001965 -
Aed1g1078 989 PANTHER AUTOIMMUNE REGULATOR 1 984 - -
Aed1g1078 989 PANTHER AUTOIMMUNE REGULATOR 1 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1078 Aed-Chr1 10672014 10679327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1078 289 985 PHD Transcription Factor Family AT2G36720 44.780 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1078 - - gmx:100803825 1771.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1078 1 10672014 10679327 Aed1g1078 1 10672014 10679327 ECH
Aed1g1078 1 10672014 10679327 Aed5g0590 5 4288475 4291455 PCT