Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1077 ATGGCAGTTGCTGGTATGCATAATGTGTCTGTGCTCGAATCTACCTTCCTAAGGGAATCCCATTCTCAGTCATCTGGGAGGCAGGGAGATGGAGAGAGGGGAGGCACCCGGTCGCCTTCAGTCTTGCAAATGTGGCGAGAGATTGAGGATGAGCAGGTAGTGAGACAAGATCAAGGAAGACCTGGGGAGGCACACAGGAATGATGATTTAGTTGTGGACCTCTCACAGGAAAATATGCCAGATAGCATCAACCAGAGAGAAGAGCATATGATAGAGGATGCAGTATTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGATGAACAGGAGGAATTGAACAATTCTAGCCGTGAAAACTCCTCTGATTTTGGACAAGTTGAAAGGGAAAGAGTGAGACAAATATTCAAGGAATGGATGAATAGTGGTTCTAGGGATCATGCATCAAATAATTCCCATGGAAATAATGGTTCAAGGGGAGAACGGCCCGGGGAAACTGAACAGGAAAGGGTGAGTATCATAAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAACTTGGTACCCAAATCGAATGTGTTCGTGATGGATTTGTTGTTAACCAGAATGAGGGCCAATGCCAAACTGAGCATACACGGAGGGGAATCCGTAAATTACGTGGTCGACAGGTGTTTCTTGATATGCTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGAGTTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGTTTCGTTTTCAGAAAGGACAATTTTGGTTGCATGATTGCAACCAGTAACACATCTGATACCTCATCTGAGAATGATATTGATGTTAATACAGTTGAACAAACTGGAGCTAGCAGTTCACAAGCAGTCCCAACTGTACATTTTCAACAATCTGAGCCTAACAAGGGAAGTGACCGAATTGAGATATCAGATGATCAGATTTGTTTACAAGGAACCATTTGTGAGAATTTAGATCGGGAAGTCTCTACTGCTCATGTGGAAACAAGAGATTGGGAATCATCTTCCAGTACCAGGGTTGAAAGAGGACATGGCACTGGAGGAAATGTTGATATGATCCCAACTGAAGATCCTTCTAATGACCTTACTCAACTAAGCTTGCAAATTGAAGATACAGAGCATGACCATATGCATGAGTTAATCGAGGTACATACTGAGCAATCTCAGCGGGGTGATATAACTAATGATGAAAGCAATTTATCAAATCATGATGGTCGTGTATACAGCAGTATTGTTGATGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTGGAGCAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGACTGGCATCAAAATGAGGATGATAATCAGCTCAGTAGCACAACAAATGAATGGCCCCAAAACATATTGGGAAGTGAAGATGGAGAAAATTCTCGTATGCAGGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGACGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGTAGTTTTCGTGAAAGTCTTGACCAGTTAATACAATCATATGTTGAAAGGCAAGGTCATGCTAACGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCAGGGCAACAGAGTAGGGATCCAATTGTTGGTTCTCAGGCTACTGTTAGTAGCTCACTTGACCGCCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCACGTCATGACAATTGGTCACAGAATGACATAAATAATCAGCGCTTAGGAATTGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTATCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGGAATACATGACCATGTTTCACAAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAGGCACCAGTGGTGGAAGTGATACGAGCTTATTCTATACAATAG 2520 0.4282 MAVAGMHNVSVLESTFLRESHSQSSGRQGDGERGGTRSPSVLQMWREIEDEQVVRQDQGRPGEAHRNDDLVVDLSQENMPDSINQREEHMIEDAVLGENDSETWSQSQNEFHDEQEELNNSSRENSSDFGQVERERVRQIFKEWMNSGSRDHASNNSHGNNGSRGERPGETEQERVSIIREWVQMSSQQRGVSSGENREEQSSELGTQIECVRDGFVVNQNEGQCQTEHTRRGIRKLRGRQVFLDMLKKAEMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFVFRKDNFGCMIATSNTSDTSSENDIDVNTVEQTGASSSQAVPTVHFQQSEPNKGSDRIEISDDQICLQGTICENLDREVSTAHVETRDWESSSSTRVERGHGTGGNVDMIPTEDPSNDLTQLSLQIEDTEHDHMHELIEVHTEQSQRGDITNDESNLSNHDGRVYSSIVDDVDLIESIALEVEQQEEVIIENDGSDWHQNEDDNQLSSTTNEWPQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANVEWELQETTPSSPLAEQDSGQQSRDPIVGSQATVSSSLDRPLPPTPPPQPLWDRHSRHDNWSQNDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIHDHVSQDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1077 839 MobiDBLite consensus disorder prediction 403 437 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 145 174 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 186 205 - -
Aed1g1077 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 837 IPR013083 -
Aed1g1077 839 MobiDBLite consensus disorder prediction 148 164 - -
Aed1g1077 839 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 645 696 - -
Aed1g1077 839 PANTHER PROTEIN, PUTATIVE-RELATED 1 839 - -
Aed1g1077 839 Coils Coil 715 742 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 15 73 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 48 72 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 15 31 - -
Aed1g1077 839 CDD mRING-HC-C3HC5_NEU1 787 825 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 354 374 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 107 121 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 515 535 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 521 535 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 645 676 - -
Aed1g1077 839 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 839 - -
Aed1g1077 839 ProSiteProfiles Zinc finger RING-type profile. 787 826 IPR001841 -
Aed1g1077 839 SUPERFAMILY RING/U-box 776 832 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 354 376 - -
Aed1g1077 839 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1077 Aed-Chr1 10660193 10666180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1077 787 833 C3H Transcription Factor Family AT3G06140 38.298 6.90e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1077 - - gmx:100804887 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1077 1 10660193 10666180 Aed5g0591 5 4303674 4310923 PCT