Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1061 ATGGAACCTCCCGTCGTGCGATCCAGGGGCCGCCCGCGCAAACGGAGGAGAGAAGACGACGATGCGAAAACGCTTCCCGATGCGAAGAAAACGACGCCGATAGCATTGGTTGGACGATACGTGTTGAAAGTGTTCCGCAGAAACACGGTTCTTCTCGGCAAAGTCTTGCGTTACGAGAATGGATTGTACAGAGTCATATATGAGAGTGGCGGTTACGAGGAATTAGATAGCAGCGAGATTCGTAGGATACTTCTCCTTGATAGTTATTTCGACGAAGATTTGACTCAGAGGAAGGTTAAATTGGAGGAATCGGTGTTGCCGAAGATCACAGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCAAGGTGAATTATCGGTCGAGAACGAAAAGGAACGAGCTGAGACGGATGATGAGTCGTCGTTCGGTGAGGCTATGGATTCGAGTTCCGGTGTCGAAATGCCAGAAACGCCTATACCGTCGCCGCCGATGCTGCCACCGTCTTCTAGAACAATTGCCGTGCCGGAACCGTGCGTTTTGAATCTGTTTTCGCTTTACGGATTTTTAAGATCGTTTAGCATTCGCCTGTTTATGAGTCCGTTTACTTTGGACGAGTTTGTTGGTGCTTTGAACTGTAAAGTTCCGAACACGCTGCTTGATGCTATTCACGTTTCTCTGATGCGTGTTTTGAAACGTCACCTTGAAAACATTTCACCAGATGGCTCGCGGCCTGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTTTGTTTCAGTATTTAGCAATTTTTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGAAGAAATCTTTTATGGAGAGTATTACTTATTGCCTGCAAGTAGGAAATTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGCATCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAATAGCCTTCCTGCTGAAAATGGGCCTAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATGCTGAAACTAAGAAATATGTTTCAGGATTGAGCGCTGAGGATGGTGATGTTGATGGAAATGGAGATGAATGTCGCTTATGTGGCATGGATGGGACCTTGCTATGCTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATTAATATGATTGGGCCTACAATTGCACGGGGAACTTCACTTAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGCTCAATGTCAACAGTGATGACTTTTGTCTTAAGTACTACAATCAAAATGACATTCCCCGAGTGTTCCAAGTCCTTTATGCATCTGAGCAACATAGACCCATATACAATGGTATTTGCATGGCAATGTTAGAATATTGGAATATTTCAGAAAACTGCTTACCACTTTGTGTCAGTAAACTTCCTCCTATGGTCGAAGAAGAGCATAAATCTGTTAGTTCGGTGAAGGCAGGATACAGTTTAGCGATTGGGAATGGGATTTGTAGTGTTAATTTGGTGCCATCTCTTGATGCTTCATTGGTTACAACTCGAAGTCCTGCTCCTGGAAGCAGTGGCAATGCAAGAACTACTGTGAATTTGAAGCTTCATGAGGAAACTGCAATGGATTCAACTGTTAACCATCAGTCTGACCCGAAGTGTCAAAATTCTGTTAATAGGTCAGCTGCTGTAAGCCCTGCCAAGTGTTCCTTGGTAAGCAGCCAATTTAATAATTATGGGCACATAAATGACATAGGGTTGCCTACAAATTTGTCTTTGCAAACTAGAGGTGACCAATCTGGTTTTGGAAACTGCAAAGGCAGTTTAACTAATGATTTTGTGTACATGGGGTTCTCCTATAAACCACAGTCATATGTTAATTACTATATGCACGGTGATTTTGCTGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCGTGTATCTGGCAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCTCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCCGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCATTTCTTGTAAAGCCCATGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCAACCAAAAGTGCAATGAAAACCCTTTCCTGTCTTGCTCCTGTACGGAGTGGAGAAGGAATCATCCCTAGCATTGCAACATATGTTATGTATATGGAGGAAAGTTTACGTGGCTTAATAGTTGGGCCCTTTCTTAGTGAATATTATAGAAAGCATTGGCGTAAACAAGTGGAACGAGCCAAATCATTTAGTGATATAAAGCCCCTTTTACTCAAACTTGAGGAGAATATTCGAACAATTGCTTTCCGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATGCAAAGTGCTGCTTGTACACTTGGAACAACACAGAAACGTGCAACTTGTGGGAGGCGTAAGAAACAGTTATCTATTAATAAAGTTACAGCTGGTGGTTGCCAGGAAAATTTTGCATGGTGGCATGGTGGGAAATTTACCAAATCTGTATTTCAGAAAGCAGTTTTGCCAAAATCCATGGTCAGGAAAGGAGCCCGCCAAGGTGGTTTGAGGAAAATTTTGGGTATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAATTCAAATGAGTAGGAATGCATCTCAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATAAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCAGGATGTGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAATTGGAGAGGGCAAAAGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACTGGTTGTTCTGTGAGTTCAACTGTGTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCATACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCATGTAATGAATCTCCAACTAGTCCGTTACTCTTACAAGGACAAGGACAAGAACAAGAACGTAGCACTTCTGTAGTTCTGAAGGGGCCAAGGCCAAAATGTGATGGTCAAGGACTGATGTCTACTAGGACGAATAATAGTCAGCTTGACATGAAACGAGTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGGTCAGGCCTGCCTCAATTGGAACCTGTTTGTCGCTTGTGCCATAAACCATATAGATCTGACATAATGTATATTTGCTGTGAAACATGCAAATATTGGTATCATGCTGAAGCTGTTGAACTTGACGAGTCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTGTGTCCTTACTCTGGTTACAAGATGCAAGAGGGCAAGAAGTTACTCACTAGGGCTTCAAAGAAAGAGCATTTTGGGGCAGATTCTGATTCTGGTACACCTATTGACACGAGAACATGTGAGCCGGCAACTCCTATATATCCTGCAGGGGATGTATCTAGACAAGACAATGATCCTCTGTGGTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACCCCAGTTAGATGCAGATGTTGCAGGTGATACTGTCTCTGGGCCAGGGCTTCTGAAACTTCCTAAACATGAGAGAGAGAATAATGGTTCTTTTAGAGGTAATCTTCATGCTGAGATTTTATCAAACAATGAATATGGTTCTGCTGACTGCAATCTTCTGAATAACTCTAAAAATGTTAATTATGATGAATTAGTGGATTTTGCACCTCATACCTACTTCTCTCTGACTGAACTGCTCCACTCAGATGATAATAGTCAATTTGAGGAAGCTAATGCATCTGATGACTTCTCAGGGTATTTGAAAAACTCTTGTACAATAGGTGTTTCTGAAGAATGTGCGACTGTTAATTTAGCATCCAACATTGGATCTACAGAAGGTAATCTTAATAATTGTCGGCAATGTTCACAAAAGGAACCGGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTTGGATTCACAGCCATTGTTCACCTTGGGTTGAATCATCATCTTGGTTTGATAGTTGGAGATGTGGTGATTGCCGGGAATGGCGTTAG 4458 0.4246 MEPPVVRSRGRPRKRRREDDDAKTLPDAKKTTPIALVGRYVLKVFRRNTVLLGKVLRYENGLYRVIYESGGYEELDSSEIRRILLLDSYFDEDLTQRKVKLEESVLPKITAEEPEKGSSELQGELSVENEKERAETDDESSFGEAMDSSSGVEMPETPIPSPPMLPPSSRTIAVPEPCVLNLFSLYGFLRSFSIRLFMSPFTLDEFVGALNCKVPNTLLDAIHVSLMRVLKRHLENISPDGSRPATKCLRCSDWSLLDALTWPVFLFQYLAIFGYTKGPEWKGFYEEIFYGEYYLLPASRKLMILQILCDDVLASEELKAEMNMREESEVGIDYDNEDNSLPAENGPRRVHPRYSKTTACKDAETKKYVSGLSAEDGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKINMIGPTIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLNVNSDDFCLKYYNQNDIPRVFQVLYASEQHRPIYNGICMAMLEYWNISENCLPLCVSKLPPMVEEEHKSVSSVKAGYSLAIGNGICSVNLVPSLDASLVTTRSPAPGSSGNARTTVNLKLHEETAMDSTVNHQSDPKCQNSVNRSAAVSPAKCSLVSSQFNNYGHINDIGLPTNLSLQTRGDQSGFGNCKGSLTNDFVYMGFSYKPQSYVNYYMHGDFAASAAANLAVLSSEDSRSEGRVSGNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCISCKAHVSSKKGCMLNHAALSATKSAMKTLSCLAPVRSGEGIIPSIATYVMYMEESLRGLIVGPFLSEYYRKHWRKQVERAKSFSDIKPLLLKLEENIRTIAFRGDWVKLMDDWLAEFSTMQSAACTLGTTQKRATCGRRKKQLSINKVTAGGCQENFAWWHGGKFTKSVFQKAVLPKSMVRKGARQGGLRKILGIFYADGSEIPKRSRQLVWRAAIQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLQDVKGQDTEASAFRNANIRDKNWRGQKNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCIQCHHAKLLTQKESCNESPTSPLLLQGQGQEQERSTSVVLKGPRPKCDGQGLMSTRTNNSQLDMKRVASDFPLETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCHKPYRSDIMYICCETCKYWYHAEAVELDESKLFDVLGFKCCKCRRIKSPVCPYSGYKMQEGKKLLTRASKKEHFGADSDSGTPIDTRTCEPATPIYPAGDVSRQDNDPLWFSLSSVELITEPQLDADVAGDTVSGPGLLKLPKHERENNGSFRGNLHAEILSNNEYGSADCNLLNNSKNVNYDELVDFAPHTYFSLTELLHSDDNSQFEEANASDDFSGYLKNSCTIGVSEECATVNLASNIGSTEGNLNNCRQCSQKEPAPDLSCQICGIWIHSHCSPWVESSSWFDSWRCGDCREWR 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1061 1485 MobiDBLite consensus disorder prediction 1083 1100 - -
Aed1g1061 1485 ProSitePatterns Zinc finger PHD-type signature. 386 427 IPR019786 -
Aed1g1061 1485 PANTHER PHD FINGER FAMILY PROTEIN 1029 1482 - -
Aed1g1061 1485 MobiDBLite consensus disorder prediction 1083 1115 - -
Aed1g1061 1485 MobiDBLite consensus disorder prediction 13 27 - -
Aed1g1061 1485 Pfam DDT domain 178 232 IPR018501 -
Aed1g1061 1485 MobiDBLite consensus disorder prediction 110 140 - -
Aed1g1061 1485 SMART PHD_3 1182 1230 IPR001965 -
Aed1g1061 1485 SMART PHD_3 1437 1482 IPR001965 -
Aed1g1061 1485 SMART PHD_3 385 428 IPR001965 -
Aed1g1061 1485 CDD PHD_SF 1438 1481 - -
Aed1g1061 1485 CDD PHD_SF 1182 1229 - -
Aed1g1061 1485 SUPERFAMILY FYVE/PHD zinc finger 1178 1236 IPR011011 -
Aed1g1061 1485 Pfam PHD-finger 386 428 IPR019787 -
Aed1g1061 1485 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 323 IPR028942 -
Aed1g1061 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 432 IPR013083 -
Aed1g1061 1485 SMART testlast3 176 236 IPR018501 -
Aed1g1061 1485 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Aed1g1061 1485 MobiDBLite consensus disorder prediction 110 158 - -
Aed1g1061 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1178 1236 IPR013083 -
Aed1g1061 1485 MobiDBLite consensus disorder prediction 1 27 - -
Aed1g1061 1485 SUPERFAMILY FYVE/PHD zinc finger 355 429 IPR011011 -
Aed1g1061 1485 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1025 - -
Aed1g1061 1485 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1029 1482 - -
Aed1g1061 1485 SUPERFAMILY FYVE/PHD zinc finger 1430 1483 IPR011011 -
Aed1g1061 1485 ProSiteProfiles Zinc finger PHD-type profile. 383 430 IPR019787 -
Aed1g1061 1485 PANTHER PHD FINGER FAMILY PROTEIN 1 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1061 Aed-Chr1 10542731 10550459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1061 15 516 PHD Transcription Factor Family AT5G35210 48.190 1.04e-138 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed1g1061 DDT 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1061 - - gmx:100808614 1858.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1061 1 10542731 10550459 Aed1g1061 1 10542731 10550459 ECH
Aed1g1061 1 10542731 10550459 Aed5g0606 5 4411686 4420720 PCT