Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1060 ATGGGGAGCAAGGTGAGCGACCACCACTTATCCACCGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCACTGCGGCCATCAACATCATCTTCGACACTCACACCGCCCCGAAATTCAAGCCCACGCGCCCCGCCAATCCCCAACCAGTTTCTCCTCCAAAACCGACCACTCCCACTCCCACTCCCATCGTTGCCGCCAACTCAAACCACAGTGTCGGTGAAATACACAGCGATGATTGGTGGTTTGTGAGTTGTGGCGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGACTTTAAGCTCCGGCGAGACCGTGATTTTCAAGTTTCCGGCGAAGAAGCTCTCAGCTTCGCCCTCTCCGGGGAAGGGGTTTGGACGGGCCGCGACTTGTTCGGAGATAGTTCGATTCTCCACGGAACAAGCTGGGGAGATTGGTAGAATACCGAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATACGCGCCTAAAGTTCTGGGCATCATGGATTCCATTGTTTTGTCTGTTAGTGTATTTATCAATAGTTCGATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACTGATGAATCGGTGTTTCATTCGCTTCCAACTTTGTTTCGGTTACTGGGTTTAAACCCTTTTAAGAAGGCAGAATTAACTCCTGGTGATTTCTATTCCAACAAACGTCCTGTCACTCAAAGGGAGAGATATTCTCTTCAGGTCACATTACCATGTGCCAAGTCAGAGCATCCTTCTCAAAATGGTCATGAGAATGACAATGAGGATTCCATTTCGGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCGAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAGTCTTATGTGTGAATTGCGGCCCTATCAAAAGCAGGCGCTTCATTGGATGATCCAGATGGAGAAGGGACAATCTATGGACGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAACGTGTTCTCTGGTGAAGCTGCAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCTGTTCTCGCTGCCCATTCAGGAAAGGGTGGATCAGTAGGCAGTCAACCCATAACCCAATCCTTTATTGAAGGCGGTGAAGTCAGTGATACAGTGCACAAATTTTCAAACATACCCAAGAAGGCAACCAAATTTGCTAGTTTTGATAAACCGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACTCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCCCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGCGAGAATGCAGAGGAAAATGGTGGACTCTTCGCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACACACCATAAAATCTTCAAAAAGCCAAATTTCTTTAGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCGATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTTTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAAATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTGTAGTGCTTCAGAAGGTGAAGTAAAAGATGCACCTTCACGGGCTTATGTTCAAGAAGTTGTAGAAGAGCTACGTAAAGGGGAGCAAGGCGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCAGTGTTAACGCCTTGTGCTCATCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTATGTCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAACAGGCAAGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTGTTCTTTTAAATGAACTCAAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCATTTACTCGGAATAACATTCCATTTGTTCGTCTTGATGGGACTTTGAGTCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCTTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTTGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTTCCATTAGACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGCAGGCAGTGCAAGCACGTAAAGAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3024 0.4527 MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKPTRPANPQPVSPPKPTTPTPTPIVAANSNHSVGEIHSDDWWFVSCGEMTGLSTCKGRTLSSGETVIFKFPAKKLSASPSPGKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGQCKYAPKVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANSTDESVFHSLPTLFRLLGLNPFKKAELTPGDFYSNKRPVTQRERYSLQVTLPCAKSEHPSQNGHENDNEDSISEIDVENIVGVGSSSELEEMDPPGSLMCELRPYQKQALHWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNVFSGEAAIEFPSTLQMARGGILADAMGLGKTIMTISVLAAHSGKGGSVGSQPITQSFIEGGEVSDTVHKFSNIPKKATKFASFDKPMKQKNALTSGGNLIICPMTLLGQWKAEIETHVHSGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENAEENGGLFAIRWFRVVLDEAHTIKSSKSQISLAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEAEKDFYGALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTCSASEGEVKDAPSRAYVQEVVEELRKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNAMSGLCPVCRKTINRQDLITAPTENRFQVDIEKNWVESCKVTVLLNELKNLRSSGSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLSLQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVSIRRFIVKGTVEERMQAVQARKERMISGALTDQEVRTARIEELKMLFT 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1060 1007 Gene3D - 654 1007 IPR027417 -
Aed1g1060 1007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 600 IPR014001 -
Aed1g1060 1007 CDD DEXDc_SHPRH-like 325 638 - -
Aed1g1060 1007 Gene3D - 448 639 IPR038718 -
Aed1g1060 1007 Gene3D - 381 427 IPR038718 -
Aed1g1060 1007 SMART helicmild6 871 954 IPR001650 -
Aed1g1060 1007 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 101 1007 - -
Aed1g1060 1007 SUPERFAMILY RING/U-box 760 818 - -
Aed1g1060 1007 Pfam Helicase conserved C-terminal domain 842 954 IPR001650 -
Aed1g1060 1007 ProSiteProfiles Zinc finger RING-type profile. 772 812 IPR001841 -
Aed1g1060 1007 CDD SF2_C_SNF 838 965 - -
Aed1g1060 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 996 IPR027417 -
Aed1g1060 1007 MobiDBLite consensus disorder prediction 56 74 - -
Aed1g1060 1007 SMART HIRAN_2 97 205 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aed1g1060 1007 Pfam HIRAN domain 101 201 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aed1g1060 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 638 IPR027417 -
Aed1g1060 1007 SMART ring_2 772 811 IPR001841 -
Aed1g1060 1007 MobiDBLite consensus disorder prediction 51 81 - -
Aed1g1060 1007 SMART ultradead3 321 622 IPR014001 -
Aed1g1060 1007 Pfam SNF2-related domain 328 716 IPR000330 GO:0005524|GO:0140658
Aed1g1060 1007 ProSitePatterns Zinc finger RING-type signature. 787 796 IPR017907 -
Aed1g1060 1007 MobiDBLite consensus disorder prediction 278 298 - -
Aed1g1060 1007 CDD RING-HC 772 811 - -
Aed1g1060 1007 PANTHER DNA REPAIR PROTEIN RAD5 101 1007 - -
Aed1g1060 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 836 IPR013083 -
Aed1g1060 1007 Pfam Zinc finger, C3HC4 type (RING finger) 772 811 IPR018957 GO:0046872
Aed1g1060 1007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 842 1007 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1060 Aed-Chr1 10533602 10541342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1060 1 1007 RAD5 or RAD16-like Gene Family AT5G22750 70.890 0.0 1488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed1g1060 SNF2_N 2.7e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1060 K15505 - gmx:100794558 1855.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1060 1 10533602 10541342 Aed1g1060 1 10533602 10541342 ECH