Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1055 ATGGAGTTCTGGGGTGCCGAGGTTAAGGTTGGGGGGTCTGTTAAGGTAGACCCAGCCGAATTCGAGGCATGCATTCACCTCTCTCAGGCTGCACTTGGCGAGACAAAGAAAGACAAACCAAGTGAACCTGTGTTTCTCTACTTGAAAATTGGTGACCAGAAATTTGTCTTGGGAACCCTTTCCAAGGACAAAATTCCTCAAATATCTCTGGAATTGGTTTTGGAAAAGGAGTTTGAGCTTTCACACAGTTCAAAGAATGCCAGCGTCCATTTCTGTGATAGCGATGAGGATCTTCCATTGGTTAATGCAGAGAATGGAAAACCTGAAGAGTTGAAGATGGGTGATGCTGATGACAGTGATGAGGAGAGTGATGATGACGAAGATGATGAAGAGACACCTCCTAAGAAGGCTGATCTGGGGAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTTCCACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAGGGTGGACATACAGCAACTCCTCACCCAGTGAAGAAAGGTGGAAAGACTCCCAACAGTGATGCCAAGACTCCCAAGGCTGCTAACAGTGAGGCCAAGTCTCCCAAGTCTGGTGGACTCTCTTGCAAAAGCTGCAGCAAGTCATTCAACTCTGATAGTGGTCTGCAACAACATAATAAGGCAAAGCATGGTGGTCAGTGA 708 0.4605 MEFWGAEVKVGGSVKVDPAEFEACIHLSQAALGETKKDKPSEPVFLYLKIGDQKFVLGTLSKDKIPQISLELVLEKEFELSHSSKNASVHFCDSDEDLPLVNAENGKPEELKMGDADDSDEESDDDEDDEETPPKKADLGKKRPNESASKTPVSTKKAKNATPEKTDGKKGGHTATPHPVKKGGKTPNSDAKTPKAANSEAKSPKSGGLSCKSCSKSFNSDSGLQQHNKAKHGGQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1055 235 MobiDBLite consensus disorder prediction 86 235 - -
Aed1g1055 235 Gene3D Nucleoplasmin core domain 1 94 - -
Aed1g1055 235 MobiDBLite consensus disorder prediction 191 229 - -
Aed1g1055 235 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Aed1g1055 235 MobiDBLite consensus disorder prediction 100 114 - -
Aed1g1055 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 235 IPR013087 -
Aed1g1055 235 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 92 - -
Aed1g1055 235 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 109 231 - -
Aed1g1055 235 MobiDBLite consensus disorder prediction 160 174 - -
Aed1g1055 235 MobiDBLite consensus disorder prediction 115 132 - -
Aed1g1055 235 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 92 - -
Aed1g1055 235 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 109 231 - -
Aed1g1055 235 Pfam Nucleoplasmin-like domain 3 90 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1055 Aed-Chr1 10498368 10501175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1055 1 228 C2H2 Transcription Factor Family AT3G44750 38.095 1.26e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1055 NPL 2.5e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1055 - - gmx:100795506 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1055 1 10498368 10501175 Aed1g1055 1 10498368 10501175 ECH
Aed1g1055 1 10498368 10501175 Aed5g0610 5 4466607 4469699 PCT