Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1039 ATGACGGAGGAACACGAGAATGGCGCCAACACAAGCGAGGAGGAGCAGCCGATAGGCCCGGGCCCTGCCCCTCGGGCTCGGCCCAAGCGTCCCCTTCAGTTCGAGCACGCCTACCTCGACGCCTTACCATCCGCTAACATGTACGAGAAAAGCTATATGCATCGTGATGTGGTTACACATGTCGCTGTTTCGGCTGCGGAATTTTTCATCACCGGAAGTGCCGATGGGCATTTAAAGTTTTGGAAGAAAAGGCCCATTGGTATCGAGTTTGCGAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTATCTGTTAGTATTGACGGTCTGCTTTGCTGTACAATATCAAATGATCGCTCTGTGAAAATATATGACGTAGTCAACTTTGATATGATGGTCATGATTCGCTTGCCATATGTTCCTGGTGCTATTGAATGGGTTTACAAACAAGGGGATGTCAAAGCTACGCTTGCCATTAGTGATAGGAACTCATCTTTTGTTCATATATATGATGCACGGGCTGGTTCAAATGATCCTATCATCTCTAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAACCCTATATGTGGTTCTGTACTTTCGGCAGATCTAAAGGGGATAATTGAATACTGGAGCCCTGCTACACTTCAATTCCCAGAGAATGAGGTCAGTTTTAAATTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCGGCTATTGAGGTTAGTCCAGATGGTAAGCAATTTTCCATTACATCACCTGACCGTAGAATACGTGTGTTTTGGTTCAGAACGGGTAAACTAAGGCGAGTTTATGATGAATCCCTGGAGGTCGTTAATCTGCACACCAATAAAGTAGCTCGAATCCTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGAAGTAGCAAAAAAGTAAGAAAGATCCCTGCAGCATCTTCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGATGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAGCCACCTGCTGATGAACTTTTGGCAGTTTCGGATATTGGAAAGTCAGTTACAACATCACTTCCTGACAATGTGATTCTACACACAACTATGGGTGATATTCACATGAAATTATACCCAGAGGAATGTCCCAAAACTGTGGAGAATTTCACAACTCACTGCCGAAATGGCTACTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGTGATCCTCTAGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAGTTTGAGGATGAATTTCATAAAAGTTTGAGGCATGACAGGCCTTTCACAGTATCAATGGCAAATGCTGGCCCAAATTCAAATGGTTCTCAGTTCTTTATCACCACAGTTGCTACTCCGTGGTTGGACAACAAGCACACGGTATTTGGTAGAGTTGCGAAGGGAATGGATGTGGTACAGGCTATAGAAAAAGTGAAGACTGACAAGACAGATACGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA 1674 0.4277 MTEEHENGANTSEEEQPIGPGPAPRARPKRPLQFEHAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSADGHLKFWKKRPIGIEFAKHFRSHLGPIEGLSVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYVPGAIEWVYKQGDVKATLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNPICGSVLSADLKGIIEYWSPATLQFPENEVSFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVVNLHTNKVARILGKVENNDRFLRIALYQGDRSSKKVRKIPAASSNANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPDDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNSNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDTPYQDVKILNVTVPKS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1039 557 Pfam WD domain, G-beta repeat 92 126 IPR001680 GO:0005515
Aed1g1039 557 Pfam WD domain, G-beta repeat 58 82 IPR001680 GO:0005515
Aed1g1039 557 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 4 289 - -
Aed1g1039 557 CDD cyclophilin_WD40 405 552 - -
Aed1g1039 557 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 404 554 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 SMART WD40_4 45 82 IPR001680 GO:0005515
Aed1g1039 557 SMART WD40_4 87 126 IPR001680 GO:0005515
Aed1g1039 557 SMART WD40_4 233 272 IPR001680 GO:0005515
Aed1g1039 557 SMART WD40_4 177 216 IPR001680 GO:0005515
Aed1g1039 557 SUPERFAMILY Cyclophilin-like 401 554 IPR029000 -
Aed1g1039 557 Gene3D - 146 394 IPR015943 GO:0005515
Aed1g1039 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 82 IPR001680 GO:0005515
Aed1g1039 557 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 501 513 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 443 455 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 486 501 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 417 432 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 514 529 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 290 555 - -
Aed1g1039 557 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 400 554 IPR002130 GO:0000413|GO:0003755
Aed1g1039 557 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 290 555 IPR044666 -
Aed1g1039 557 Gene3D - 395 557 IPR029000 -
Aed1g1039 557 Gene3D - 40 145 IPR015943 GO:0005515
Aed1g1039 557 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 438 455 IPR020892 GO:0003755|GO:0006457
Aed1g1039 557 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 4 289 IPR044666 -
Aed1g1039 557 MobiDBLite consensus disorder prediction 1 29 - -
Aed1g1039 557 SUPERFAMILY WD40 repeat-like 56 295 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1039 Aed-Chr1 10411286 10416802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1039 404 554 U-box Gene Family AT5G67530 46.358 1.55e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1039 K12736 - qsu:111996721 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1039 1 10411286 10416802 Aed1g1039 1 10411286 10416802 ECH