Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1038 ATGAAGGTCGTCGCTGCTTATTTGCTCGCAGTGTTGGGAGGGAATTCATCCCCTTCTGCCAGTGATATCAAACACATCCTTGGCGCAGTTGGAGCTGATGCTGATGAGAAGTTGATTAATTTGCTCTTGACTGAAGTCGAGGGCAAAGACTTCAATGAGCTACTTGCTTTTGGAAGCCAAAAGTTGTCGGCAGTGGGTTCTGGTGGCGGTGCTGTAGTTGCTGTTGCTGCTGCCCCAGCTGCTGGTGGCGGTGCTGCACCTGCTGCTGAAGCAAAGGAAGAAAAGAAAGAAGAGAAGGAGGAGTCTGACGATGACATGGGTTTCAGTTTGTTCGACTAA 339 0.4985 MKVVAAYLLAVLGGNSSPSASDIKHILGAVGADADEKLINLLLTEVEGKDFNELLAFGSQKLSAVGSGGGAVVAVAAAPAAGGGAAPAAEAKEEKKEEKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1038 112 MobiDBLite consensus disorder prediction 83 112 - -
Aed1g1038 112 MobiDBLite consensus disorder prediction 89 103 - -
Aed1g1038 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Aed1g1038 112 Pfam 60s Acidic ribosomal protein 17 111 - -
Aed1g1038 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Aed1g1038 112 Gene3D - 1 59 IPR038716 -
Aed1g1038 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 112 - -
Aed1g1038 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1038 Aed-Chr1 10400033 10401504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1038 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 65.179 7.08e-27 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1038 K02943 - gmx:100791682 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1038 1 10400033 10401504 Aed1g1038 1 10400033 10401504 ECH