Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1030 ATGTATAGCAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCCGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCGTTAGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAGGAGATTCGGGCCGTGCTCGACGATGGCGGCCCCGGCCCGGCCTCCAACGGGGACGCGGCTGTGGCTGCTAGGCCCAAGACTAAGCCCAAGGATGGTGAAGGCGGCGGCGGTGACGGCGAGGATCCCGAGCAAGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGAGAGAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTCACTGGGAAAAGACGACCCTGGAGAGCTTTCTTGTTGTATGGACCTCCAGGAACGGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCTGAATCTACTTTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCTCCTTCTATCATATTTATTGATGAGATTGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAGCTTTTGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCCTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTGAAAGCTCGCCAACACATGTTCAAGGCAAGGACAATATACTTGATTGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAATACTTGGCTAGCAAGACAGAGGGGTTTTCCGGTTCAGACATATCTGTTTGTGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTTTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAGTACAAACCACAATGCAGGAACTTGCTACAAAAGGACTTGCTTCTCAGATCCTTCCTCCCCCTATTACGAGGACAGATTTTGACAAGGTACTAGCTAGACAAAGGCCTACAGTAAGCAAAACCGACCTTGATGTTCACGAGAGATTCACGAAGGAATTTGGAGAGGAAGGTTAA 1317 0.4837 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKARTIYLIVHLGDTPHNLTESDFEYLASKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQTTMQELATKGLASQILPPPITRTDFDKVLARQRPTVSKTDLDVHERFTKEFGEEG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1030 438 CDD AAA 135 294 - -
Aed1g1030 438 Gene3D - 6 75 - -
Aed1g1030 438 Gene3D - 127 426 IPR027417 -
Aed1g1030 438 MobiDBLite consensus disorder prediction 91 111 - -
Aed1g1030 438 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 438 - -
Aed1g1030 438 Pfam ATPase family associated with various cellular activities (AAA) 169 294 IPR003959 GO:0005524|GO:0016887
Aed1g1030 438 SMART smart 2 79 IPR007330 -
Aed1g1030 438 SUPERFAMILY MIT domain 2 81 IPR036181 -
Aed1g1030 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 434 IPR027417 -
Aed1g1030 438 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Aed1g1030 438 PANTHER AAA DOMAIN-CONTAINING 1 438 - -
Aed1g1030 438 Pfam Vps4 C terminal oligomerisation domain 371 435 IPR015415 -
Aed1g1030 438 Gene3D - 296 418 - -
Aed1g1030 438 SMART AAA_5 164 296 IPR003593 -
Aed1g1030 438 ProSitePatterns AAA-protein family signature. 266 285 IPR003960 GO:0005524|GO:0016887
Aed1g1030 438 CDD MIT_VPS4 4 77 IPR045253 -
Aed1g1030 438 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1030 Aed-Chr1 10342968 10347633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1030 163 359 Calmodulin-binding Proteins AT3G56690 35.961 8.15e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1030 K12196 - gmx:100806836 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1030 1 10342968 10347633 Aed1g1030 1 10342968 10347633 ECH
Aed1g1030 1 10342968 10347633 Aed5g0644 5 4741495 4746480 ECH
Aed1g1030 1 10342968 10347633 Aed5g0644 5 4741495 4746480 PCT