Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1029 ATGGCGGAAGAACACAGATGCCAGGCACCGCGCTTCTGCGCCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATATGTGTTCCAAGTGTTACCGCGATTTCCAGCTCAAGGAGCAACAATCCTCCAACGCAAAGATGGTTCTGAATCAATCTCTCGTTCCATCGCCGCTTCCGGCGCTGATTTCTCAGCCGTCGTCTTCTTCCGCGGCGACAGATCCGGCTGCCGCGGCGGTTGTTGACGCGCCACGCGCGGCGGAGGAGGTTAAGGCACCGCAGCAGAACCGGTGCATGACATGTAGACGGCGCGTGGGGCTCACGGGATTCAAGTGCCGGTGCGGGATGATGCTGTGCGGGACCCACCGTTACCCGGAGCAACACGCGTGCGAGTTCGACTTCAAGGAGATGGGGAGGGAGCAGATCGCGAAGGCGAATCCGGTGGTTAAGGGCGAAAAGCTCGAGAAGATCTGA 474 0.5949 MAEEHRCQAPRFCANNCGFFGSPATQNMCSKCYRDFQLKEQQSSNAKMVLNQSLVPSPLPALISQPSSSSAATDPAAAAVVDAPRAAEEVKAPQQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKEMGREQIAKANPVVKGEKLEKI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1029 157 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Aed1g1029 157 SMART AN1_Zf_4 98 135 IPR000058 GO:0008270
Aed1g1029 157 Gene3D - 67 153 IPR035896 -
Aed1g1029 157 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Aed1g1029 157 ProSiteProfiles Zinc finger AN1-type profile. 92 138 IPR000058 GO:0008270
Aed1g1029 157 Gene3D - 1 58 - -
Aed1g1029 157 Pfam A20-like zinc finger 13 34 IPR002653 GO:0003677|GO:0008270
Aed1g1029 157 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 157 - -
Aed1g1029 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Aed1g1029 157 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 157 - -
Aed1g1029 157 SUPERFAMILY AN1-like Zinc finger 86 152 IPR035896 -
Aed1g1029 157 Pfam AN1-like Zinc finger 98 134 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1029 Aed-Chr1 10341474 10341947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1029 1 157 C2H2 Transcription Factor Family AT3G52800 47.977 1.50e-47 150