Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1028 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAATCTGTGTCTTCTTCAAACCCCAACTAATTTTATTGAGTGGCTCAAACCTTCATCTTCCTCTCTAGCTAGTTCAATTTCATCAACACCTCAGCATGATGATGATCAACCTGGCCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAGATCATGATCATCACCGTGGAGTGCAAAAGGAGGATGGTTTAGATCAAGAAGTAAAGGAAGAGAAGGTGGAACATGTTACTGTGGCTTTGCACATTGGATTGCCTAACATACACGACCCTGATGCTGATGAGAAGAAGATTTTCCATGTTAAGGAAGAAGAAGATCAAGATCAACCCTTGAAGAAAAAATTCCAGGGTTGTTCTTTCAATCAGCAGGAGCGAAGATTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCTTATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGGTCCGAATATAGGAAAGGACCAGAGTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGGGCAAAGCCCTTGAAGGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCACGGTGCTAAACCATTCATGTGCCGAAAGTGTTCCAAGTCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGAAGGTTGTGGTATTGCAGTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTTAAAGATCACATTAGATCCTTTGGAAAAGGTCACTCTCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGACAAGGAATGCGTTACCGGTTCTGATGAAGATCATGATGTTGCTCATACATGA 948 0.4346 MSFRECNVENKNLCLLQTPTNFIEWLKPSSSSLASSISSTPQHDDDQPGQETIQFLPFKEDHDHHRGVQKEDGLDQEVKEEKVEHVTVALHIGLPNIHDPDADEKKIFHVKEEEDQDQPLKKKFQGCSFNQQERRFWIPTPAQILVGPMQFACSLCSKTFNRYNNMQMHMWGHGSEYRKGPESLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGRLWYCSCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDDKECVTGSDEDHDVAHT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1028 315 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 312 - -
Aed1g1028 315 PANTHER ZINC FINGER PROTEIN WIP2 43 312 IPR043584 GO:0003700|GO:0010468
Aed1g1028 315 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Aed1g1028 315 SUPERFAMILY beta-beta-alpha zinc fingers 125 174 IPR036236 -
Aed1g1028 315 SMART c2h2final6 198 230 IPR013087 -
Aed1g1028 315 SMART c2h2final6 235 255 IPR013087 -
Aed1g1028 315 SMART c2h2final6 151 173 IPR013087 -
Aed1g1028 315 SUPERFAMILY beta-beta-alpha zinc fingers 221 255 IPR036236 -
Aed1g1028 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Aed1g1028 315 Gene3D Classic Zinc Finger 193 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1028 Aed-Chr1 10333760 10338256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1028 21 304 C2H2 Transcription Factor Family AT1G08290 55.623 2.38e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1028 - - gmx:100819306 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1028 1 10333760 10338256 Aed1g1028 1 10333760 10338256 ECH
Aed1g1028 1 10333760 10338256 Aed5g0652 5 4777612 4777983 PCT