Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1019 ATGTACCATCACCAAAACCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACGGGAAATGGGTCTGGTGATTCTGGACTAGTGCTTTCAACTGATGCTAAGCCTAGATTAAAATGGACACCAGATCTTCATACCAGGTTTATAGAAGCTGTCAACCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTTATGAAACTCATGGGGATTCCAGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAATGGTACTCACATGAACAAATTAAGCCTTGGACCGCAGACTAACAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAGCTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTATTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTAGGGCTTGAAGCTGCCAAAGTTCAACTTTCAGAGCTAGTGTCCAAAGTCTCATCTCAGTGTCTCAACTCAGCATTCTCAGAGCTGAAGGATTTGCAAGGATTTTGCCCTCAGCAAACACAAACCAACCCGCCAAACGATTGCTCGATGGACAGTTGCCTCACCTCCAGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGTCACAGAAGTGGCTCCAAACAATAACCTTAGGAACTCTGAACTCAAGTGGTGTGAAGATGGGAAAAAGAACACCTTCCTTGCCTCATTGAGCAAGAATGAAGGAAGAAGAAATTATGCTGCTGAAAGCAGTCCCAACAACAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGATGCAGCATGTATCCTGAGAGACAAATCACAGAAAACCAATCAAATGGTGAGTTCCAGCACAGGAACAGAACCAAGACAGACACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGTTGTCTGCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGACAATGAAGCTGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1275 0.4314 MYHHQNQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHTRFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSAATGERLSETNGTHMNKLSLGPQTNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKDLQGFCPQQTQTNPPNDCSMDSCLTSSDRSQKEQEIQNGLRHFNSHMFMEQKEVTEVAPNNNLRNSELKWCEDGKKNTFLASLSKNEGRRNYAAESSPNNNLSMSIGLERETENGCSMYPERQITENQSNGEFQHRNRTKTDTMKPVDEKVSQDYRLSASYFAAARLDLNTHGDNEAAATTCKQLDLNRFSWN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1019 424 Gene3D - 44 102 - -
Aed1g1019 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 424 IPR044848 GO:0003700
Aed1g1019 424 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Aed1g1019 424 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Aed1g1019 424 PANTHER MYB-RELATED PROTEIN 2 4 424 - -
Aed1g1019 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Aed1g1019 424 Coils Coil 149 169 - -
Aed1g1019 424 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Aed1g1019 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1019 Aed-Chr1 10285142 10288164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1019 77 424 G2-like Transcription Factor Family AT3G04030 50.000 8.00e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed1g1019 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1019 - - gmx:100810396 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1019 1 10285142 10288164 Aed5g0660 5 4835808 4841855 PCT