Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g1017 | ATGAGTAAGCTTCAGAGTGATGCTCTGAGAGAAGCCATCTCCGGAATCATGACTGATACCAAGGAGAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTCGGAGATGCCCAACACGTTGAGGAGGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTAAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCCGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGCATGTTTTCTTGTAAGTTCCCTACTCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTTAAGTTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTTCAAAATGTACAACTGAGTGTCAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAATGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGA | 663 | 0.4404 | MSKLQSDALREAISGIMTDTKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGMFSCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g1017 | 220 | PANTHER | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 2 | 218 | - | - | |
| Aed1g1017 | 220 | PANTHER | 60S RIBOSOMAL PROTEIN L10A-3 | 2 | 218 | - | - | |
| Aed1g1017 | 220 | SUPERFAMILY | Ribosomal protein L1 | 3 | 220 | IPR023674 | - | |
| Aed1g1017 | 220 | Gene3D | - | 140 | 218 | - | - | |
| Aed1g1017 | 220 | Gene3D | - | 1 | 119 | - | - | |
| Aed1g1017 | 220 | Pfam | Ribosomal protein L1p/L10e family | 22 | 214 | IPR028364 | - | |
| Aed1g1017 | 220 | PIRSF | RPL1p_RPL1a_RPL10e_RPL1o | 1 | 220 | IPR002143 | GO:0003723|GO:0003735|GO:0006412|GO:0015934 | |
| Aed1g1017 | 220 | CDD | Ribosomal_L1 | 9 | 219 | IPR028364 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g1017 | Aed-Chr1 | 10279551 | 10281780 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed1g1017 | 1 | 220 | Cytoplasmic Ribosomal Protein Gene Family | AT1G08360 | 86.818 | 4.97e-126 | 353 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g1017 | K02865 | - | gmx:100305550 | 397.512 |