Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1000 ATGGAAGGGGTTTCGAGGGAGGCTCAGATGTCGATTGCTGCTTCATCCATGTTTCCTGGCTTCAGATTCTGCCCTACTGATGAGGAGTTGATTTCTTATTACCTTAGGAAGAAGATGGACGGTCATGAAGAGAGTGTTCAAGATTCTTTGGTGATATGTCGCCTCAAGAGGAACACCGAGTTCCGTTTGAACGATGCTTCTAATAGAGCTTCATCAAGTCAAATACACGCCGTGAATTCACATGAAAGTGGTTGTGCTATCTCAGAAGGTGGTATTGATCAAAGAGATGTATGTGAGCAAGACAAAGAAGTAGGGTGTAGCTCCAAGAGGGACAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTCTGTGTCCGAATCGAGTCATCGACAAGTTAATGAAGCTACTTTGACAGAATCTTCAGGTCAACCAAAGGAGGGGTATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATAAAATTAGATGAGTCATCAATCCCAGCAGAGTGTCACATAATACCACAGGATCCTGCACCACAAGGCACAGCACAACGGAGAATAAGATTAAGGATTAGGAATTCAAAGCATTCTGCTGCGGTGGTTCGTATTCCAAGCACAAAGCACTCTTCAAAGACTACTACTACATTCTTAGCTAAAACAACCAACAGTTTGGTGGTATTTGCTTTCTTCGTTTTCACTCTCACTCTCACAGTTCTATATTTTTTATTAGTAAATCATTTTGATCGTGTATTTATGAGGGTCCAGGGGTCCTGTTTGTTAGAATTGCGGCATAGGGTAGCCTTGGGTGCTCCCAACCGCAACGAATCACAGCTTTCATCTTCCAAGGTTTCCTCGCCCACATCCATCGGTGTTTACTCTGTAATTAGGACCATGTCGAGGCCCATGTTGCTTGTTTTCTTGCTCATTATACTTATAATCACCTCACAGTTCGAGTGGAAGCAGCAGCTTGTGCCCGATGTTGACTCCAACCCCAACGTGTCTCAGAAGCAGCATCAGATTTCTAAGGCTGAAGAAACCGTAAAGGAGAAGATTATTTTAGTGCAAGAGAAGAATATTCGAAGACTGAATGAGCTAGTGCGGCATCTCCAGGAACAACTGCAGCAGTGTAGAGGACGCAATGGAACTATAAATGGCACTGTAAGCCCTCTAGCTGAGCGGATTCTTGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1233 0.4339 MEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKMDGHEESVQDSLVICRLKRNTEFRLNDASNRASSSQIHAVNSHESGCAISEGGIDQRDVCEQDKEVGCSSKRDSSSYGSPSMEQIDSVSESSHRQVNEATLTESSGQPKEGYEEDCYAEILKDDIIKLDESSIPAECHIIPQDPAPQGTAQRRIRLRIRNSKHSAAVVRIPSTKHSSKTTTTFLAKTTNSLVVFAFFVFTLTLTVLYFLLVNHFDRVFMRVQGSCLLELRHRVALGAPNRNESQLSSSKVSSPTSIGVYSVIRTMSRPMLLVFLLIILIITSQFEWKQQLVPDVDSNPNVSQKQHQISKAEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCRGRNGTINGTVSPLAERILELERQQILED 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1000 410 Coils Coil 357 384 - -
Aed1g1000 410 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE G 276 410 - -
Aed1g1000 410 MobiDBLite consensus disorder prediction 103 149 - -
Aed1g1000 410 SUPERFAMILY NAC domain 9 44 IPR036093 GO:0003677|GO:0006355
Aed1g1000 410 MobiDBLite consensus disorder prediction 109 145 - -
Aed1g1000 410 Pfam No apical meristem (NAM) protein 19 47 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1000 Aed-Chr1 10198909 10204343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1000 4 46 NAC Transcription Factor Family AT2G27300 72.093 3.10e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g1000 NAM 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1000 - - gsj:114373381 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1000 1 10198909 10204343 Aed1g1000 1 10198909 10204343 ECH