Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0991 ATGGAGTCGAGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGCGCGTTTGGCGCTGCGATTCTCGTCAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGCCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCTCTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTTAAAGAGGCTTGGGTTGAAAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAGCTACTCTTAGCAGTGGAATATTTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCCAACATTTTTCTTACCAAGGATCACGATGTTCGCCTAGGAGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCAGCTTATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAAATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGCTATTCCCCATCTTTGAAAACGCTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAGCACCCGTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCAACGGCTAATTCTCCTCAAAAGCCAATTTCTACTGTCCATCATCGTCGAAAAAATAAGCCGGAAAGTCAAAACAGTAGTAGTTCAAGTACCGAGAAAGATAGTTTGATGTCAAATGAGAAAAACACTGCAAAAGCAGTACAGAAGTGTGATAGCAAAATCACTGAAATAGACCTGACATCAATTGAGGATGACGGCTCTGAGCAACTCTTGCCTGAGGAAGAAAGAAATGGCTCCATCAAAGTCAATGCCAAAACAGATGTGCAAGAGCTGACGAAGCAATCTAATAATGAACACCATTCTAATGTTGTATCTAAGCAACCAGAACCAATTAAGAATGTAGTGACAGCTTTGAAAGATGGAAAACTTAGAGAGACAAGTTCTCCAATAAGAGGCAATCGCATAAAGGTTGGTGGTGTGTTGACACATAAAGTAAACACAGAGACAGTGTCCAAATTGCCCAAACCCAATTTTGGGGCTTATGATTTGAAGCCTAATTCGGAGTTGCCACCAACTTCACCTTCTAAAACAACTCCTGATTCTGCAAAAAGAATGCAAGGATCACATGCTTTAAAGCATCAGTTACCAATGATAGAATCCACACCAAAAACTAGACCTCGACATAATGTGATTTCACCATCTGGTCCAGTCAAACAAGTAGAAGGACGTGAAGTACCTTCCAAGCCAAGACAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCCAAATGCAGCAAATAATACTGGAAAGTCAACTCCAAAGAAAATGGTCCGGGAGCCTAAGATGAGCCATCATCCGTTGACCAACAGTCATCTACCACATGTTTCTAGAGAGATTACTAGAGAGCCTTTGAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCACTCTCTATTCAAGGATTTGAACTTTCTGATTTTGCAACCACGTTTATTGACTTAAGTGAACCAACACTTCTAGATCATGAGAGTTTAAACCACACTGAAAATGTGGAATCACGTCCAGATAGCAGTTCACCTGCATCCTATTTTCATTTTGAGATGTTTGAACAATTATCTGGGGAAACCCCTGTGGTTACACCGCGTTTTCAGAATATAACTAACAGTAATGAGAAAGTAAGTCCCAGTTTAACTCTTGATTACTCAGGCCAAGATGCTGAGGTAATGTTTTCTTCTGATGATAGTTTTCCCATAAATCAAAGGACTGCATCTGCTGGCTCCAGGTGTGATAATAGATCTGTAGATTTATCTGCTGAAATCACAGAAGAAATCAAAGACCCTCAAGATATTTCTAAGGAAATGTCTTCAACCAAGTCTCTCCAACAGTCGCTCCCCACATCTGGCCAGAAAGTTTTTCAAGAAGAGAAAGCAACAGTTTTACAGAATCCATCACCAGAAAGGCCAGCTGTCGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGCGTGGGGAGTGAGCAACCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATTTAGAAATGAGAAATGTGAGCACTCCTTTGACCCTAAAATCTTCAAATTGCTCTGAAGCTATTTGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTGAACAATCCTCCTAACTTAAAATCTTCAAGTTGTTCAGAAGACTCATTGAGCATGAAATCAAGTTTTTCTGATCATCATGGTGTTAGGGAACAAGATGTCAAAAGCACTAGTTCTCTTGTTTCAAAATCTGATTCTTCTGAGTATACCAAACATAACGATAACGCTCCCACAGCTGAAGAGGAGAAAACGCCTCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTTCAGCAAAATAGATTGCAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGGACGCAGTTAA 2973 0.4117 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAYRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTANSPQKPISTVHHRRKNKPESQNSSSSSTEKDSLMSNEKNTAKAVQKCDSKITEIDLTSIEDDGSEQLLPEEERNGSIKVNAKTDVQELTKQSNNEHHSNVVSKQPEPIKNVVTALKDGKLRETSSPIRGNRIKVGGVLTHKVNTETVSKLPKPNFGAYDLKPNSELPPTSPSKTTPDSAKRMQGSHALKHQLPMIESTPKTRPRHNVISPSGPVKQVEGREVPSKPRQKTPPSLLKPPSFPGHVRQAGFDVPNAANNTGKSTPKKMVREPKMSHHPLTNSHLPHVSREITREPLKTFESSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLLDHESLNHTENVESRPDSSSPASYFHFEMFEQLSGETPVVTPRFQNITNSNEKVSPSLTLDYSGQDAEVMFSSDDSFPINQRTASAGSRCDNRSVDLSAEITEEIKDPQDISKEMSSTKSLQQSLPTSGQKVFQEEKATVLQNPSPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDLEMRNVSTPLTLKSSNCSEAICLKSNISDNMEIRNLNNPPNLKSSSCSEDSLSMKSSFSDHHGVREQDVKSTSSLVSKSDSSEYTKHNDNAPTAEEEKTPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLQELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0991 990 MobiDBLite consensus disorder prediction 899 924 - -
Aed1g0991 990 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0991 990 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Aed1g0991 990 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Aed1g0991 990 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 558 - -
Aed1g0991 990 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 713 974 - -
Aed1g0991 990 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 558 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 428 544 - -
Aed1g0991 990 Gene3D Transferase(Phosphotransferase) domain 1 90 339 - -
Aed1g0991 990 CDD STKc_Nek 7 262 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 443 459 - -
Aed1g0991 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Aed1g0991 990 MobiDBLite consensus disorder prediction 726 745 - -
Aed1g0991 990 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0991 990 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
Aed1g0991 990 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0991 990 MobiDBLite consensus disorder prediction 849 871 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 339 358 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 298 324 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 730 745 - -
Aed1g0991 990 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 713 974 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 849 924 - -
Aed1g0991 990 MobiDBLite consensus disorder prediction 276 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0991 Aed-Chr1 10136592 10142614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0991 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 7.15e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aed1g0991 Pkinase 3.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0991 K08857 - gmx:100818943 1577.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0991 1 10136592 10142614 Aed1g0991 1 10136592 10142614 ECH
Aed1g0991 1 10136592 10142614 Aed5g0697 5 5078676 5085253 PCT