Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0980 ATGGCAACGTACTATCATGGAAGCACTTCGGAAATTCAACCTTCGGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTACCCAGACGCGCCGCACCACCCAACAACGCTCCTCGTCAATCCCAACGCGCTAAACCACGCGAATATCTCCCACGCGCCGACAGTCTCACCAAACCACCACCAGCAGCACGTGATTCACGGCGTGACAAACATCCTCGGATCCAACAATTCCGATGATCACTCACGACCGTCGTTGTTCGGCGAAAACATCGCCGCCTTCCATGGATTCTCCGGCGGGGGAGGCGGAGCCTCCTCCGCCGCCACCCCTCGCCTTCACTATAACCTGTGGGGTCCGGTGGTTGATCAACCGGGAACCCCGTCTAGCAGCTCCGGTGGCGGCAGTTTCCGGCGGCCGAGTCAGCAGGGTTTGTCTCTAAGCCTTTCATCGCAGCAAACGAACTTCAGATCAGTTTCCGGGGAGCTTGACGTGGCCGGACAGGGCCACATCGCCGGAATTGGGAACTCGCCGACATCGACGTCGACTGGAGTTTCAGGTGTTATTATGGGGTCGAAGTATTTGAAAGCTGCACAGGAGCTTCTGGATGAAGTTGTTAAAGTGGGAAAAGGAATCTACAAAGAGGAGAAATTCGGAGAGAAGCTGAAAGCGAATAATAGAGAATCTGCTAATTCTGGTGCTGCTGGTGGTGATGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGGAAACAAGTTGTTGAACTCAGCACCGCTCAGAGGCAAGAGCTTCAGATGAAGAAATCCAAGCTTGTCACCATGCTCGATGAGGTAGAACAAAGGTATAGGCAATACCACCACCAAATGCAAATAGTGGTATCATCATTTGAGCAAGCAGCGGGATATGGGGCAGCAAAATCATACACAGCCCTTGCCCTAAAGACAATCTCAAAGCAATTCAGGTGCCTTAAAGATGCAATATCTGCACAAATAAAAGCGACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTGAAGGTAGAAGGGTCTAGGCTTAGGTATGTTGATCACCATCTAAGGCAACAAAGGGCACTTCAGCAGCTTGGAATGATTCAGCCCAATGCATGGAGGCCCCAAAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCGTATCCAAAGGACTCCGATAAGGTTATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTTTCAAACTGGTTTATCAATGCCCGAGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAGGAGCATGATGAACAAGCTAACAACGGTTCAGAAAACACGAAATCGAGCAAGGAGTTGGCATCAACAGCAAATGTTGTTGCACCGGAATCAAAATTACAAGATCAAAGCTTCAACAACCAAAACACTTCTCCAACCGACATCTCAGCAAACTCTTCATTGTCTCCAATGGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCATCTGACATGCAAAGGAATACTCTAAACAAACCAAGAACTTCCGAAATGCAAAACTCTCCAAGTAGTATCCTCTCATCAGTGGACATGGAAATGAAGCATAATAATGGTATTGATCATCATGATCATCATGCAAACAATAGAGAAGCCAACGCCAACACAACAAAGTTTGGGGCCGGGTTTGGAGCGTTCACCATGGAAGACATTGGAAGCAGATTCAATGTCACTACTGAGCAACTTGCTTCAAGGTTCCATGGAAACGGTGTTTCTCTCACTTTGGGACTTCCCCACAATGAGAACCTCTCTATGTCAGGAACTCAACATGGATTTCTCTCACAGAATATACATTTGGGAAGAAGATCACTTGAGATGGGAACAAATGGAAATGAGTTTTGTGCTATCAACACTACTCCACCTTCTTCTCACTCAGGCACCACTTATGAGAACATTGACATACAAAACAGAAAGAGGTTTGTTGCTCAGTTATTGCCAGATTTCGTGGCCTAG 2061 0.4784 MATYYHGSTSEIQPSADGLQTLYLMNPTYVPYPDAPHHPTTLLVNPNALNHANISHAPTVSPNHHQQHVIHGVTNILGSNNSDDHSRPSLFGENIAAFHGFSGGGGGASSAATPRLHYNLWGPVVDQPGTPSSSSGGGSFRRPSQQGLSLSLSSQQTNFRSVSGELDVAGQGHIAGIGNSPTSTSTGVSGVIMGSKYLKAAQELLDEVVKVGKGIYKEEKFGEKLKANNRESANSGAAGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEIKEHDEQANNGSENTKSSKELASTANVVAPESKLQDQSFNNQNTSPTDISANSSLSPMGGSLQSHSGFHLASDMQRNTLNKPRTSEMQNSPSSILSSVDMEMKHNNGIDHHDHHANNREANANTTKFGAGFGAFTMEDIGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLSMSGTQHGFLSQNIHLGRRSLEMGTNGNEFCAINTTPPSSHSGTTYENIDIQNRKRFVAQLLPDFVA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0980 686 Gene3D - 382 444 - -
Aed1g0980 686 SMART prehox3 186 331 IPR006563 -
Aed1g0980 686 MobiDBLite consensus disorder prediction 126 156 - -
Aed1g0980 686 Coils Coil 263 283 - -
Aed1g0980 686 Pfam Associated with HOX 191 330 IPR006563 -
Aed1g0980 686 SMART HOX_1 379 443 IPR001356 GO:0003677
Aed1g0980 686 MobiDBLite consensus disorder prediction 478 514 - -
Aed1g0980 686 SUPERFAMILY Homeodomain-like 380 445 IPR009057 -
Aed1g0980 686 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 634 - -
Aed1g0980 686 MobiDBLite consensus disorder prediction 227 253 - -
Aed1g0980 686 CDD homeodomain 379 440 IPR001356 GO:0003677
Aed1g0980 686 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Aed1g0980 686 MobiDBLite consensus disorder prediction 122 156 - -
Aed1g0980 686 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Aed1g0980 686 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0980 Aed-Chr1 10063285 10068585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0980 1 686 Homeobox Transcription Factor Family AT2G35940 44.536 7.82e-138 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aed1g0980 POX 2.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0980 - - gmx:100779075 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0980 1 10063285 10068585 Aed1g0980 1 10063285 10068585 ECH
Aed1g0980 1 10063285 10068585 Aed5g0704 5 5212387 5217806 PCT