Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0979 ATGGTGTATGAATCTGATACAATGACTGCAGAAATTGAAATTCCTCAGTTTTTTCTCTGTCCCATTTCGCTTCAGATGATGAAGGACCCTGTGACAACCGTTACAGGCATAACATACGACAGAGAAAGCATCGAGCATTGGTTGGTAAAAGCGAAAGATTGCATGTGTCCAGTTACAAAGCAACGATTGCCACGAAGCTCAGAGTTCTTAACCCCGAACCACACGCTTCGGAGGCTGATCCAAGCGTGGTGTTCAGCAAACGAAGCCAATGGCGTTGACCAAATTCCAACCCCGAAATCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCGTCGCTTTCAAAACGCATTGGAGAAGTTGCACGCGCTTGCAGTAGAGAACGAGAGGAACCGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTTATCACAAAGAGTAGTAAAACGACGTCGTGCGTTGAAGAGGCGCTGAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAACAACATGAAGCGTATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGTTTTGCAGCTTCAAACCAAGAACGTAATAAACGAAGCAATGCCTATATTGAAATTGGTAATTGAAGCCAAAGACTCAACCCCTTTGGGGAACTTAAAGCTTGAATTCTTCAAAGTTGTTGTGAGTGTGATGAGAAATAGAGAACTCTCTCAGCAAGCTATCAAATCCGCGTTGCATGTGCTTATAGAAACGTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGCAGGTGCAGTGGTGGAACTCGTTGATCTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCATATTCATCCTTTTGGCTCATCTTTGTTCTTGTGCTGATGGGAGAGAGCAGTTTCTGCAGCATGCTGCGGGCATTGCAGTGGTTTCTAAAAGGATCCTTAGGGTTTCACCAACCATTGATGATCGAGCTCTTCATATATTTTCATTGGTTTCTAAGTTCTCAGCTTCGAATGAGGTTGTGCAAGAGATGCTTAGAGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTGCACTCCAAAACATGGAACAATTCTCCATGTATTCAAGTGTATTTGTTAACCAGGTTCCAGAGGTGA 1233 0.4428 MVYESDTMTAEIEIPQFFLCPISLQMMKDPVTTVTGITYDRESIEHWLVKAKDCMCPVTKQRLPRSSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVPRRFQNALEKLHALAVENERNRRCMASAGVAEAMVHVITKSSKTTSCVEEALRILRLLWSSANNMKRMVGENFDFLNSLTWVLQLQTKNVINEAMPILKLVIEAKDSTPLGNLKLEFFKVVVSVMRNRELSQQAIKSALHVLIETCPLGRNRMKIVEAGAVVELVDLALEKPEKNMTELIFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTIDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0979 410 SUPERFAMILY ARM repeat 118 393 IPR016024 -
Aed1g0979 410 ProSiteProfiles U-box domain profile. 13 90 IPR003613 GO:0004842|GO:0016567
Aed1g0979 410 SMART Ubox_2 17 83 IPR003613 GO:0004842|GO:0016567
Aed1g0979 410 Gene3D - 107 400 IPR011989 -
Aed1g0979 410 Pfam U-box domain 14 88 IPR003613 GO:0004842|GO:0016567
Aed1g0979 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 11 408 - -
Aed1g0979 410 PANTHER WDSAM1 PROTEIN 11 408 IPR045185 GO:0061630
Aed1g0979 410 CDD RING-Ubox_PUB 18 61 IPR045210 -
Aed1g0979 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Aed1g0979 410 SUPERFAMILY RING/U-box 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0979 Aed-Chr1 10060436 10061668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0979 8 400 U-box Gene Family AT2G35930 43.108 1.27e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0979 - - gmx:100778547 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0979 1 10060436 10061668 Aed5g0706 5 5229559 5231787 PCT