Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0978 ATGGATGAAATTGAAATCCCTGCTGATTTCCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACGGTTACTACAGGAATCACTTACGATAGAGAGAACATTGAAAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACTAAGCAATGTCTATTGAACCATGATCTCATCACGCCAAACCATACTCTACGCAGGTTGATCCAATCCTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCAATAGACACAACTCAGATTGTGAAACTCCTCAACGAAGCAAAGAGGTTCCCAGAGAAGCAACTTAAGTGCCTCACAAGGCTTCGATCCATTGCCTTCGAAGGCCAAAGGAACATAACATGTTTAGAGTCTGCAGGAGTAATAGAATTCTTGGCCTCAACAATGAACAACACACAACAAGAAGAAAACTCGACTGCTATTGAAGTCTTGTTCCACCTCAATCTTTCAGAGGCTAAGCTCAAAGCTCTAATAAACAACGAGAGGTTTCAGTTTATAGAGTCATTGATCAATGTGCTGAGGCATGGAAACTACCAATCTAGAGGCTATGCTACAATGCTACTTAGATCAGCATTCGAGGTGGCTGATCCAATCCAAATGATCAGTGTAAAAACCGTGCTTTTCGTGGAAATCATGCGCGTGCTTCGCGATCAGATTTCTCAGCAGGCTTCAAAGGCTGCATTGAAGCTCATTGTGGAGCTCTTTCCTTGGGGAAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGATCCTCATTGAGCTTCTACTTCTTGGTGCATCAGAAAGAAGAACATGTGAACTCATTTTGGTAGCTTTGGATCAAGTTTGTGGTTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCTATTGTGTCAAAGAAAATTCTAAGGGTGTCTCATGTGGCAAGTGACAGAGGGGTTAGGATTTTGGCCTCTATTTGTAGGTATTCGGCAAATGCTAGATTGCTTCATGAAATGTTGCAGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTCAATTGCAGTTTCAAGACTAAGGAGAGGGCCAAGGAGATACTCAAATTGCACTCCACTGTTTGGAGGAATTCCCCATGTATTCCTGTGCCTATGTTATCTTCTTATCCATGA 1203 0.4406 MDEIEIPADFLCPISLQLMRDPVTVTTGITYDRENIERWLFSCKNNTCPVTKQCLLNHDLITPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDTTQIVKLLNEAKRFPEKQLKCLTRLRSIAFEGQRNITCLESAGVIEFLASTMNNTQQEENSTAIEVLFHLNLSEAKLKALINNERFQFIESLINVLRHGNYQSRGYATMLLRSAFEVADPIQMISVKTVLFVEIMRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSILIELLLLGASERRTCELILVALDQVCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASICRYSANARLLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILKLHSTVWRNSPCIPVPMLSSYP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0978 400 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Aed1g0978 400 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Aed1g0978 400 PANTHER WDSAM1 PROTEIN 1 400 IPR045185 GO:0061630
Aed1g0978 400 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Aed1g0978 400 Gene3D - 95 386 IPR011989 -
Aed1g0978 400 SUPERFAMILY ARM repeat 98 378 IPR016024 -
Aed1g0978 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Aed1g0978 400 SUPERFAMILY RING/U-box 3 78 - -
Aed1g0978 400 CDD RING-Ubox_PUB 10 53 IPR045210 -
Aed1g0978 400 PANTHER OS11G0573500 PROTEIN 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0978 Aed-Chr1 10055278 10056480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0978 2 400 U-box Gene Family AT2G35930 55.693 2.56e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0978 - - gmx:100778012 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0978 1 10055278 10056480 Aed1g0978 1 10055278 10056480 ECH
Aed1g0978 1 10055278 10056480 Aed5g0707 5 5241912 5243608 PCT