Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0963 ATGTCAATGGATATGATGGCAGCCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTGACGGTTAGATGTGGACACTGTGCCAATTTGCTTACCGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCATCAAGATACTCAGGAACTAGGATCATCATCAAAGTGCAAATCATTTGAGACCGTAGACCATGAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCGTCTGCTTATAATCGCTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAACCCAGACATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGCAGGGGGATGGTACTCAAAAGTCTAACGGATTTTACTGA 504 0.4444 MSMDMMAAERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSHQDTQELGSSSKCKSFETVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQQGDGTQKSNGFY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0963 167 PANTHER PROTEIN YABBY 6-RELATED 3 167 IPR006780 GO:0007275
Aed1g0963 167 SUPERFAMILY HMG-box 88 136 IPR036910 -
Aed1g0963 167 Pfam YABBY protein 7 70 IPR006780 GO:0007275
Aed1g0963 167 Pfam YABBY protein 75 143 IPR006780 GO:0007275
Aed1g0963 167 Gene3D High mobility group box domain 81 140 IPR036910 -
Aed1g0963 167 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 167 - -
Aed1g0963 167 MobiDBLite consensus disorder prediction 75 92 - -
Aed1g0963 167 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0963 Aed-Chr1 9933813 9943914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0963 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 64.865 4.46e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aed1g0963 YABBY 1.3e-38 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0963 K25796 - gmx:100785458 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0963 1 9933813 9943914 Aed5g0716 5 5323279 5333441 PCT