Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0960 ATGGAGGGTGCTGGGATGGAAGAGAATAATATTGTTAATGATAATAATGATACTAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTGACCAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAAGCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGGAACATTAGGTTCAATCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCTATGGGTAGAGCACGCCACATTGCTAGAAGAGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACAGTTTTTGGTTTTTTCAACTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCTTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCGGCAACTGCTGTTGTCAATCTGTCTCCAATTCCTGCAACTGGAGAAGAATCATCACAGCTGACTTTAGCTGCTCCTGTACAAGCAGAGCAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACATTAGGAGATCTCCTAATCAATCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTGCAGTCATTTTCAGAATCTCTGAAATCGAAACTGAATGCCGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACACGAGGGTGGAAGGATAGATGGTTCTCTCGTAACAACACTATGTCTGATATTGGATCTGACGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGTATGATGGAATGCCTAGAGACCAGAGACAGTAATAGAAGCAATAGCAATTCAGCTCCAAGTAATTTAGAGGATGGTTCAGTTCAAGGATCTAATGATCAGCCTTTAACAGGCACGGAAGGGGACGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCGGGTAGAAATAGAAATTCCCATTGGGGATATGATGCATTGCCTATGGGCTGGCGCAGACTTATGCCTGCAGAAGAAGACCAACAATTATGA 1275 0.4502 MEGAGMEENNIVNDNNDTNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQAISLKDPTSQELLEAVERERNIRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQFLVFSTHPNSPPMAPASSSPSQRGDDEPTPATAVVNLSPIPATGEESSQLTLAAPVQAEQVSASGSGSTALATDHQGSSYNIRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKDRWFSRNNTMSDIGSDVRREVNAGIATVSRMMECLETRDSNRSNSNSAPSNLEDGSVQGSNDQPLTGTEGDGLLRDNNTKASCAAGRNRNSHWGYDALPMGWRRLMPAEEDQQL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0960 424 SUPERFAMILY RING/U-box 37 92 - -
Aed1g0960 424 MobiDBLite consensus disorder prediction 347 400 - -
Aed1g0960 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Aed1g0960 424 ProSiteProfiles Zinc finger RING-type profile. 44 84 IPR001841 -
Aed1g0960 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 14 395 - -
Aed1g0960 424 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 395 - -
Aed1g0960 424 MobiDBLite consensus disorder prediction 239 284 - -
Aed1g0960 424 MobiDBLite consensus disorder prediction 160 212 - -
Aed1g0960 424 MobiDBLite consensus disorder prediction 171 204 - -
Aed1g0960 424 SMART ring_2 44 84 IPR001841 -
Aed1g0960 424 MobiDBLite consensus disorder prediction 348 396 - -
Aed1g0960 424 Pfam Ring finger domain 43 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0960 Aed-Chr1 9899473 9903894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0960 41 92 C3H Transcription Factor Family AT5G15790 42.308 2.42e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0960 K19043 - gmx:100780275 686.026