Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0948 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGACCTTCTTCACTCACAACCCAGTAGTCCTCAACTCTTTCCCCTCTCAAGACAATAACAACAGTAACCAACAACAACATAAGTTGAAACTTGGTCCAAACATCATGGATGCCACAGTTAGCAGAAAGAGGCCTCCATCATCCACTCCTACCACCAACACCACCATCCCCTTCCAAGTCAACCTTGCCTCTTCTGATGCCAAGAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCAACAGCCATGATGATGATGATAACAACAACAACAACCTTGCCTCTGCCTCTGCCCCTCCCTCACTTGACCACCTTCATCACACACATGATCATTCCTCCACTCCTGCTATCTTGGAATTGAAAGTAAACACTGGTCTGAATCTTCTCACCACCAACACAGGTAGTGATGAATCCACCATGGACGAAGAGATATCCCCTAATTCAGAAGACAAGAGAGCTAAGAGTGAGATGGTTGTTGTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATCGGCTGAAGTACATGCTTGATCAGGTTAACAACAATTACAATTCCTTGCAGATGCATTTGGTGAGTTTGATGCAAGAGCAGAAGGGAGAGGAGGATGGAGAACAACAGCAACAACAACAACAACAAGAGAAGCAAAATGGGAATGGTGCAGGCTTGGTGCCAAGACAGTTTATGGATCTTGGGTTGGCTACTAATGCTGATACTAATAATGAGCCTTCGCTTTCTTCTTCCGTGGGAAGAAGTAAGGATCGGTCAAAGTCACCAACAAATAATGCAGAGGTGGCATCCAGGAAGAATAGTGATGAAGGACTAGACAAGAAGGATTTTGGTAGGGGAATTGAGAGAGAGGATAGTCCCTCCGATGCTAATAACAACATTGCTCCAAAGTTTAGTCCTCCAAGAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCTATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGTGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTCAGAAAACAGGTGCAAAGGTGTGCTGAAGATCGAACAATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACAACTTCATCAGCTGCAAAAATGTTGCTTTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTTCTCACAAGGACACTCCTCCCTTGTTCTTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTCACATTGGACTTGACTCAGTCTCCAAACCCATTACAGTTCCCAAAGCAACCAAGCCAATTCCAAATCCCCTTCCCTCAGAACTTTGCCAATTCCTCATCAGCCTCATTGCTGCCTCAAATATTTGGCCAAGCAATGTATAACCAATCAAAGTTTTCTGGCCTTCAAATGTCTCAAGATGCAGACACTTCCCAAAAGAGTAATCAATCTCAACGGCCATCACCACACCTTGCTGACACAGTCAGTGCTGCCATTGCAGCTGACCCCAACTTCACTGCAGCTTTGGCAGCAGCCATAACTTCCATTATTGGAGGAGGTGCACAGCCAAACAACAATACTACTACCAGTAGTAATAATAATGGCACCACATCGATCAACACCAGCAATGCCAATATTACATCAAGCAACAACAATTAA 1809 0.4555 MARGGGLSIDSDPIGTFFTHNPVVLNSFPSQDNNNSNQQQHKLKLGPNIMDATVSRKRPPSSTPTTNTTIPFQVNLASSDAKRPHIDEMDFFPNKTNSHDDDDNNNNNLASASAPPSLDHLHHTHDHSSTPAILELKVNTGLNLLTTNTGSDESTMDEEISPNSEDKRAKSEMVVVQAELERMKVENHRLKYMLDQVNNNYNSLQMHLVSLMQEQKGEEDGEQQQQQQQQEKQNGNGAGLVPRQFMDLGLATNADTNNEPSLSSSVGRSKDRSKSPTNNAEVASRKNSDEGLDKKDFGRGIEREDSPSDANNNIAPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAAKMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKQPSQFQIPFPQNFANSSSASLLPQIFGQAMYNQSKFSGLQMSQDADTSQKSNQSQRPSPHLADTVSAAIAADPNFTAALAAAITSIIGGGAQPNNNTTTSSNNNGTTSINTSNANITSSNNN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0948 602 MobiDBLite consensus disorder prediction 568 602 - -
Aed1g0948 602 Coils Coil 180 214 - -
Aed1g0948 602 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 66 594 IPR044810 GO:0003700
Aed1g0948 602 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed1g0948 602 MobiDBLite consensus disorder prediction 55 76 - -
Aed1g0948 602 ProSiteProfiles WRKY domain profile. 342 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g0948 602 SMART WRKY_cls 347 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g0948 602 PANTHER OS05G0567200 PROTEIN 66 594 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 286 306 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 250 285 - -
Aed1g0948 602 Pfam WRKY DNA -binding domain 349 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g0948 602 MobiDBLite consensus disorder prediction 45 130 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 222 237 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 81 102 - -
Aed1g0948 602 Gene3D WRKY domain 332 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed1g0948 602 MobiDBLite consensus disorder prediction 214 337 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 518 541 - -
Aed1g0948 602 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0948 Aed-Chr1 9823918 9829989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0948 138 569 WRKY Transcription Factor Family AT1G62300 54.725 3.34e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed1g0948 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0948 - - gmx:100127384 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0948 1 9823918 9829989 Aed1g0948 1 9823918 9829989 ECH
Aed1g0948 1 9823918 9829989 Aed9g0705 9 4914499 4917154 ECH
Aed1g0948 1 9823918 9829989 Aed5g0725 5 5415831 5418497 PCT