Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0946 ATGGAATGGAGTAGAGGCCTCATCATAGGACGTGGCTCATCCGCCACCGTTTACACCGCCACCTCCTCCCACTCCTCCACCGTCGCGGCGGTCAAGTCGGCAGAGGTAACACCATCAAACTCAGAGCAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTGCCTACAAAGGGTGTAACATAGCAGAGGAAAACAAGACCCTATGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTCTCCCAGGAAAGTCGCCGGCACGGTGGCCGGCTCAGCGAGCCGGCCATCGTGCACTACACGCGACAAGTTCTGCAGGGGCTAGAGTACTTGCACAATAACGGTGTTGTGCATTGTGATATTAAAGGTAGTAACATTTTGATCGGTGAAGATGGGGCCAAAATTGGGGACTTTGGATGTGCCAAGTTTGCGAACGATTCTCCGGCGGTGATTGGCGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCACTTGGGTGTACCGTGCTTGAAATGGCTACTGGGTTTGCACCGTGGCGTAATGTGGAAGACCCTGTCACAGTGTTGTACCGTGTTGCATATTCCGATGATGTTCCTGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGGTGGAGTTGCAGTCAGCTTCTGAAGCATCCATTTCTTGGAGAATTCAGTTCCAATGATAAGGAAATTCAGGAATCTAATTCATATTCTCCAACAAGTATTCTTGAACAGGGCTTTTGGAATTCTGTGGAAGAAGCAGAGGCAGAGAGTGTCTCTGCCTCTGGCAATGTGGTTCAAGTTAAAAGTTTTGAAGATTCTCCAAAGGGTAGGATCAGAAGTCTTGCTCTGTGTGCAAGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACTAGGGGCAGTGAAGTTGGGGATTCAAGTTGTGATGGGTGGGATTTGGATGTTAATAGTAGAATTAGTGGTTATTTTTGTGATGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAGTTTCAATTTTGAGAGAGGCAATTCTGAGTTGCTTCTCCCTTTAACATTGGATTTTTTATAA 1191 0.4736 MEWSRGLIIGRGSSATVYTATSSHSSTVAAVKSAEVTPSNSEQLQREQRILSSLFSPHIVAYKGCNIAEENKTLWFNLFMEYMPFGTLSQESRRHGGRLSEPAIVHYTRQVLQGLEYLHNNGVVHCDIKGSNILIGEDGAKIGDFGCAKFANDSPAVIGGTPMFMAPEVARGEEQGYPADVWALGCTVLEMATGFAPWRNVEDPVTVLYRVAYSDDVPEIPCFLSEEAKDFLGKCFRRNPKERWSCSQLLKHPFLGEFSSNDKEIQESNSYSPTSILEQGFWNSVEEAEAESVSASGNVVQVKSFEDSPKGRIRSLALCARDPIWELDDENWITTRGSEVGDSSCDGWDLDVNSRISGYFCDDDYYKCRDVSVVVDSFNFERGNSELLLPLTLDFL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0946 396 Gene3D Transferase(Phosphotransferase) domain 1 3 314 - -
Aed1g0946 396 Pfam Protein kinase domain 8 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0946 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 356 - -
Aed1g0946 396 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Aed1g0946 396 PANTHER MAP KINASE KINASE KINASE 1 356 - -
Aed1g0946 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Aed1g0946 396 CDD STKc_MAPKKK 2 255 - -
Aed1g0946 396 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0946 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Aed1g0946 396 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0946 Aed-Chr1 9814355 9815545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0946 1 336 MAP Kinase Kinase Kinase AT1G05100 48.555 1.76e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed1g0946 Pkinase 1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0946 K20716 - gmx:100797801 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0946 1 9814355 9815545 Aed1g0946 1 9814355 9815545 ECH
Aed1g0946 1 9814355 9815545 Aed9g0703 9 4900592 4902141 ECH
Aed1g0946 1 9814355 9815545 Aed5g0726 5 5428965 5430059 PCT