Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0944 ATGGAACTTCGTTCTCGTCGACGTCTTTCCAATCCTTCAGTCTCCGGGAAGGAGCAACAGCCTGGGGATGATGCTGTTGGGGAAGATGAAACTACTGGCATGGGAGATAACAGTAAAGATAAAGGTGTTGCTGTTGTATCTTCGGATTCAGATATAGTTTCTGGTTTTGATTCCGATTCCGATTACCAAGATGAAGAATTTGGTGGGAGCTCCGTACCTGACTTGAATCAAAATCCACTTTCGAGCATTAGTGTTTCTAGTGGAGAAGAGTATGCTTCTGATTCATCTGATGGTGGCAAGCTTTCGTCCAAAAGGGGAAAGTTCACAGGGAAAAGAAAAAGTTTCGACACAGAATATGGAGAACCGAGTAATGTGGTTAGAGTGGCGGAGTACAATGATGCTGATGCTGATTTGGCAATGTTTATGCAACAGTCATTTCCCTCTGTTTCTAAGGGTACTAAGAAGAGGAAATATTCAAGAAAAGCAAGAAAAGGAGATTCAAAGCCAGTGTTGTTGTGGAATGCGTGGGAAGATGAGCAAGAGAAATGGATTGATAAGCATATATTAGAAGATGTTCACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCACCCTCTGATCTGACTATGCCTTTACTCAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGCGACTAAAGGTGGAATACTTGCGGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTTCTCTTGTCCTTGCCAAACGTGAATTCCAACTAAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGCCTGAAGAAACCTGAGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGACCGCTTTACTTTAAACGGAAGCACCAAGGTGCTGATTTATCATGGGGCAAATAGAGGGAGGACTGTAGATTGTTTTGTAGATTATGATTTTGTCATAACTACGTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAAATAAGTTGATGTATCATCAGAACTATTTTTGTGGTCCCGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAGAGAACTTACCAGAGGGAAGTCCAAGGAATGTGACAGTAACAAGATGTCAAAGGGTTCTAAGAAAAAAAAGGAAGAGGAAATGTGGATGAATGAAGATTTAAATGCTGTGCCTGTACGTGATAGGTCAATTCTGCATGCTATGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGCAACACTGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCATTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATTAGGTTCCTGCAAATAACTCCTTACTCCTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCAGCCACAGCTCTGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATGCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCCCTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGTCAGGCTCAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTTCTCACACGACTGGCGTCAGTGTTGTCCTTGCCTTTGATGCTTAAACTGGGAACTTTCACTTATTTACTAAAACATTCCAAATTTGTATTTTACTCTTTCTTAAATGTACAGGCTGTTGATCATCCATACCTTGTGGTATACTCTCAAAGTGCAGCATCAAGAAATGCAGTTATGATTAGTAATGCTACTGTTGAACAAGTTTGTGGCATTTGCCATGAACCAGTAGAAGATGTTGTGGTTACCTCCTGTGAGCATGCATTTTGCAAAGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTTTCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGTGATCAGGCTAATAAAACAACAATTAAGGGTTTCAGATCTTCAAGTATTTTGAATAGAGTCCGTCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTCTTTAGCCAATTCACATCATTCTTGGATCTGATAAACTACTCTTTACACAAGTCTGGAGTGACCTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCTATAAAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGACAATATAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAATTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACAATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA 2862 0.4039 MELRSRRRLSNPSVSGKEQQPGDDAVGEDETTGMGDNSKDKGVAVVSSDSDIVSGFDSDSDYQDEEFGGSSVPDLNQNPLSSISVSSGEEYASDSSDGGKLSSKRGKFTGKRKSFDTEYGEPSNVVRVAEYNDADADLAMFMQQSFPSVSKGTKKRKYSRKARKGDSKPVLLWNAWEDEQEKWIDKHILEDVHLDNQSEVMNETAEAPSDLTMPLLRYQKEWLAWALKQESSATKGGILADEMGMGKTIQAISLVLAKREFQLSCEPDQSIPCSSSLKKPEIKGTLVICPVVAVTQWVSEIDRFTLNGSTKVLIYHGANRGRTVDCFVDYDFVITTYSVVESEYRKHMMPPKERCPYCGKLFLPNKLMYHQNYFCGPDAVRTEKQSKQAKKKKRELTRGKSKECDSNKMSKGSKKKKEEEMWMNEDLNAVPVRDRSILHAMKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCSHSSVRHFCWWNKYVATPIQSFGNGDAGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLASVLSLPLMLKLGTFTYLLKHSKFVFYSFLNVQAVDHPYLVVYSQSAASRNAVMISNATVEQVCGICHEPVEDVVVTSCEHAFCKACLIDFSASLGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRVRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVTCVQLNGSMSLAARDAAIKRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0944 953 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 498 IPR014001 -
Aed1g0944 953 MobiDBLite consensus disorder prediction 398 419 - -
Aed1g0944 953 SMART helicmild6 814 897 IPR001650 -
Aed1g0944 953 Pfam zinc-RING finger domain 699 740 IPR001841 -
Aed1g0944 953 SMART ultradead3 211 503 IPR014001 -
Aed1g0944 953 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 667 950 - -
Aed1g0944 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 951 IPR027417 -
Aed1g0944 953 CDD DEXDc_SHPRH-like 215 513 - -
Aed1g0944 953 ProSiteProfiles Zinc finger RING-type profile. 699 739 IPR001841 -
Aed1g0944 953 SUPERFAMILY RING/U-box 693 745 - -
Aed1g0944 953 Pfam SNF2-related domain 230 637 IPR000330 GO:0005524|GO:0140658
Aed1g0944 953 SMART ring_2 699 738 IPR001841 -
Aed1g0944 953 ProSitePatterns Zinc finger RING-type signature. 714 723 IPR017907 -
Aed1g0944 953 Gene3D - 374 587 IPR038718 -
Aed1g0944 953 Gene3D - 760 947 IPR027417 -
Aed1g0944 953 MobiDBLite consensus disorder prediction 384 419 - -
Aed1g0944 953 MobiDBLite consensus disorder prediction 1 119 - -
Aed1g0944 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 570 IPR027417 -
Aed1g0944 953 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 779 943 IPR001650 -
Aed1g0944 953 PANTHER BNAA08G28190D PROTEIN 150 643 - -
Aed1g0944 953 PANTHER BNAA08G28190D PROTEIN 667 950 - -
Aed1g0944 953 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 150 643 - -
Aed1g0944 953 CDD SF2_C_SNF 781 908 - -
Aed1g0944 953 Gene3D - 217 354 IPR038718 -
Aed1g0944 953 MobiDBLite consensus disorder prediction 70 99 - -
Aed1g0944 953 Pfam Helicase conserved C-terminal domain 783 897 IPR001650 -
Aed1g0944 953 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 759 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0944 Aed-Chr1 9796276 9804855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0944 148 953 RAD5 or RAD16-like Gene Family AT1G05120 65.675 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed1g0944 SNF2_N 4.6e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0944 K15083 - gmx:100798333 1613.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0944 1 9796276 9804855 Aed1g0944 1 9796276 9804855 ECH