Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g0944 | ATGGAACTTCGTTCTCGTCGACGTCTTTCCAATCCTTCAGTCTCCGGGAAGGAGCAACAGCCTGGGGATGATGCTGTTGGGGAAGATGAAACTACTGGCATGGGAGATAACAGTAAAGATAAAGGTGTTGCTGTTGTATCTTCGGATTCAGATATAGTTTCTGGTTTTGATTCCGATTCCGATTACCAAGATGAAGAATTTGGTGGGAGCTCCGTACCTGACTTGAATCAAAATCCACTTTCGAGCATTAGTGTTTCTAGTGGAGAAGAGTATGCTTCTGATTCATCTGATGGTGGCAAGCTTTCGTCCAAAAGGGGAAAGTTCACAGGGAAAAGAAAAAGTTTCGACACAGAATATGGAGAACCGAGTAATGTGGTTAGAGTGGCGGAGTACAATGATGCTGATGCTGATTTGGCAATGTTTATGCAACAGTCATTTCCCTCTGTTTCTAAGGGTACTAAGAAGAGGAAATATTCAAGAAAAGCAAGAAAAGGAGATTCAAAGCCAGTGTTGTTGTGGAATGCGTGGGAAGATGAGCAAGAGAAATGGATTGATAAGCATATATTAGAAGATGTTCACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCACCCTCTGATCTGACTATGCCTTTACTCAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGCGACTAAAGGTGGAATACTTGCGGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTTCTCTTGTCCTTGCCAAACGTGAATTCCAACTAAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGCCTGAAGAAACCTGAGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGACCGCTTTACTTTAAACGGAAGCACCAAGGTGCTGATTTATCATGGGGCAAATAGAGGGAGGACTGTAGATTGTTTTGTAGATTATGATTTTGTCATAACTACGTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAAATAAGTTGATGTATCATCAGAACTATTTTTGTGGTCCCGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAGAGAACTTACCAGAGGGAAGTCCAAGGAATGTGACAGTAACAAGATGTCAAAGGGTTCTAAGAAAAAAAAGGAAGAGGAAATGTGGATGAATGAAGATTTAAATGCTGTGCCTGTACGTGATAGGTCAATTCTGCATGCTATGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGCAACACTGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCATTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATTAGGTTCCTGCAAATAACTCCTTACTCCTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCAGCCACAGCTCTGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATGCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCCCTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGTCAGGCTCAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTTCTCACACGACTGGCGTCAGTGTTGTCCTTGCCTTTGATGCTTAAACTGGGAACTTTCACTTATTTACTAAAACATTCCAAATTTGTATTTTACTCTTTCTTAAATGTACAGGCTGTTGATCATCCATACCTTGTGGTATACTCTCAAAGTGCAGCATCAAGAAATGCAGTTATGATTAGTAATGCTACTGTTGAACAAGTTTGTGGCATTTGCCATGAACCAGTAGAAGATGTTGTGGTTACCTCCTGTGAGCATGCATTTTGCAAAGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTTTCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGTGATCAGGCTAATAAAACAACAATTAAGGGTTTCAGATCTTCAAGTATTTTGAATAGAGTCCGTCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTCTTTAGCCAATTCACATCATTCTTGGATCTGATAAACTACTCTTTACACAAGTCTGGAGTGACCTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCTATAAAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGACAATATAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAATTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACAATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA | 2862 | 0.4039 | MELRSRRRLSNPSVSGKEQQPGDDAVGEDETTGMGDNSKDKGVAVVSSDSDIVSGFDSDSDYQDEEFGGSSVPDLNQNPLSSISVSSGEEYASDSSDGGKLSSKRGKFTGKRKSFDTEYGEPSNVVRVAEYNDADADLAMFMQQSFPSVSKGTKKRKYSRKARKGDSKPVLLWNAWEDEQEKWIDKHILEDVHLDNQSEVMNETAEAPSDLTMPLLRYQKEWLAWALKQESSATKGGILADEMGMGKTIQAISLVLAKREFQLSCEPDQSIPCSSSLKKPEIKGTLVICPVVAVTQWVSEIDRFTLNGSTKVLIYHGANRGRTVDCFVDYDFVITTYSVVESEYRKHMMPPKERCPYCGKLFLPNKLMYHQNYFCGPDAVRTEKQSKQAKKKKRELTRGKSKECDSNKMSKGSKKKKEEEMWMNEDLNAVPVRDRSILHAMKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCSHSSVRHFCWWNKYVATPIQSFGNGDAGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLASVLSLPLMLKLGTFTYLLKHSKFVFYSFLNVQAVDHPYLVVYSQSAASRNAVMISNATVEQVCGICHEPVEDVVVTSCEHAFCKACLIDFSASLGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRVRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVTCVQLNGSMSLAARDAAIKRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT | 953 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g0944 | 953 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 228 | 498 | IPR014001 | - | |
Aed1g0944 | 953 | MobiDBLite | consensus disorder prediction | 398 | 419 | - | - | |
Aed1g0944 | 953 | SMART | helicmild6 | 814 | 897 | IPR001650 | - | |
Aed1g0944 | 953 | Pfam | zinc-RING finger domain | 699 | 740 | IPR001841 | - | |
Aed1g0944 | 953 | SMART | ultradead3 | 211 | 503 | IPR014001 | - | |
Aed1g0944 | 953 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 667 | 950 | - | - | |
Aed1g0944 | 953 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 441 | 951 | IPR027417 | - | |
Aed1g0944 | 953 | CDD | DEXDc_SHPRH-like | 215 | 513 | - | - | |
Aed1g0944 | 953 | ProSiteProfiles | Zinc finger RING-type profile. | 699 | 739 | IPR001841 | - | |
Aed1g0944 | 953 | SUPERFAMILY | RING/U-box | 693 | 745 | - | - | |
Aed1g0944 | 953 | Pfam | SNF2-related domain | 230 | 637 | IPR000330 | GO:0005524|GO:0140658 | |
Aed1g0944 | 953 | SMART | ring_2 | 699 | 738 | IPR001841 | - | |
Aed1g0944 | 953 | ProSitePatterns | Zinc finger RING-type signature. | 714 | 723 | IPR017907 | - | |
Aed1g0944 | 953 | Gene3D | - | 374 | 587 | IPR038718 | - | |
Aed1g0944 | 953 | Gene3D | - | 760 | 947 | IPR027417 | - | |
Aed1g0944 | 953 | MobiDBLite | consensus disorder prediction | 384 | 419 | - | - | |
Aed1g0944 | 953 | MobiDBLite | consensus disorder prediction | 1 | 119 | - | - | |
Aed1g0944 | 953 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 172 | 570 | IPR027417 | - | |
Aed1g0944 | 953 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 779 | 943 | IPR001650 | - | |
Aed1g0944 | 953 | PANTHER | BNAA08G28190D PROTEIN | 150 | 643 | - | - | |
Aed1g0944 | 953 | PANTHER | BNAA08G28190D PROTEIN | 667 | 950 | - | - | |
Aed1g0944 | 953 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 150 | 643 | - | - | |
Aed1g0944 | 953 | CDD | SF2_C_SNF | 781 | 908 | - | - | |
Aed1g0944 | 953 | Gene3D | - | 217 | 354 | IPR038718 | - | |
Aed1g0944 | 953 | MobiDBLite | consensus disorder prediction | 70 | 99 | - | - | |
Aed1g0944 | 953 | Pfam | Helicase conserved C-terminal domain | 783 | 897 | IPR001650 | - | |
Aed1g0944 | 953 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 683 | 759 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g0944 | Aed-Chr1 | 9796276 | 9804855 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g0944 | 148 | 953 | RAD5 or RAD16-like Gene Family | AT1G05120 | 65.675 | 0.0 | 1078 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Aed1g0944 | SNF2_N | 4.6e-47 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g0944 | K15083 | - | gmx:100798333 | 1613.59 |