Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0940 ATGGCGAGAACAGCAGTGTCGAACAACGATGAAACAGCAGGCACCACCGATGAGAGTGAGGTGAGATCAGGTGAAGAAGTGAGGAAGGGGCCATGGACCCCAGAAGAAGACGCGATCCTGATGGAGTACGTGAAGAAGCACGGCGAAGGGAACTGGAACTCCGTTCAGAAGAACTCTGGCTTGTTAAGGTGCGGCAAAAGTTGCAGACTCAGATGGGCCAATCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCGGATGAAGAACAGATCATCCTCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCCGAATGGCAGCACAGTTACCTGGCAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGATTACCCCTTTACCCCCCTGAAGTCCATGCAGAAGCCACTGCATACCATCTCCAACACCGCTACTTGGAACAACAACAACAACCACCTCATTCATCTTCATCATTTTCTCTTCTCCTATCATCTTGTTACCCCAAGAAGCTGAATGATCCAATTCCAAACCAAACTCATCATTCCTCCAATGCAACTCCACTGCAAAACAACCAACCTGATCATTCTGCTAACCGTTACATGATCAATCCAATCCAGCATTTCAAGTTTTGCAGTGAAAACAGTACTGGAAGCAATGGAAACTTTGTTTTTCCTCCATTGTCCCCTCTTTCTCCATATGGATCATCATCCTCCAGCCTCCTTAACCACAGTTTTGGTGATCATGGGGGCTTCATATCATCAGGAGGAGGAGGAGGATCTCCCTATGAACCCTCCTTTCCTAATTTGGTGCAAGGCTCCACCCCCGACATCTCTTCCAACCAAACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTTGATCATGGCTTCATGGTTAATAACAACAACAACAACAATGATTACTATGAAGTTGCACCATTGTCCCCTCCTCGTCAGAGAAACAGTGGGCTGTTGGATGCTCTAGTGATGGAGGGTCAGGGGCTTTCTTACAATGACAACAAGTCAAAGAATAAGGATGAGGACTCAGGTTTATTAGGTGGGAATAAGCAATCTTGTAAGAGGAAAAACATGGAGGGTGAAACTGTGCCTGTGGTGTCAGCCATGAAGAAGAAGAACAGTCGCAACACTACTGCTGCTACTAATGAAGAAAGCCAGAAGGATGATGATATTAGCTCCTCTCAATTGCCAAAAGGTGGGAAGAAAGATATTAGCGAGGAGGTGTTGGAGGAGATGAATGCGATGGTGGACGATGACTTGGTTAGCTTGCTGAACCAGTTTCCCTCAGAAATGCCAATGCCGGAGTGGTACCGTAGAGGAGGGGAAAATCATGTGTCATTGGGACTTGAGAATCAACCCAAACCTGCTGCAGACCCCGCCGCCGACCAGGAGTATGCTTGGACTCTCGGAACTTGCTGGAATAACATGCCCCGCATATGCTAA 1491 0.4735 MARTAVSNNDETAGTTDESEVRSGEEVRKGPWTPEEDAILMEYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSPDEEQIILDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATAYHLQHRYLEQQQQPPHSSSSFSLLLSSCYPKKLNDPIPNQTHHSSNATPLQNNQPDHSANRYMINPIQHFKFCSENSTGSNGNFVFPPLSPLSPYGSSSSSLLNHSFGDHGGFISSGGGGGSPYEPSFPNLVQGSTPDISSNQTPTPASSYASGVDHGFMVNNNNNNNDYYEVAPLSPPRQRNSGLLDALVMEGQGLSYNDNKSKNKDEDSGLLGGNKQSCKRKNMEGETVPVVSAMKKKNSRNTTAATNEESQKDDDISSSQLPKGGKKDISEEVLEEMNAMVDDDLVSLLNQFPSEMPMPEWYRRGGENHVSLGLENQPKPAADPAADQEYAWTLGTCWNNMPRIC 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0940 496 Gene3D - 84 130 - -
Aed1g0940 496 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 460 - -
Aed1g0940 496 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Aed1g0940 496 MobiDBLite consensus disorder prediction 262 308 - -
Aed1g0940 496 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Aed1g0940 496 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Aed1g0940 496 CDD SANT 84 125 IPR001005 -
Aed1g0940 496 SMART sant 81 129 IPR001005 -
Aed1g0940 496 SMART sant 28 78 IPR001005 -
Aed1g0940 496 CDD SANT 31 76 IPR001005 -
Aed1g0940 496 MobiDBLite consensus disorder prediction 276 308 - -
Aed1g0940 496 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Aed1g0940 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Aed1g0940 496 Gene3D - 29 81 - -
Aed1g0940 496 MobiDBLite consensus disorder prediction 15 34 - -
Aed1g0940 496 MobiDBLite consensus disorder prediction 346 418 - -
Aed1g0940 496 MobiDBLite consensus disorder prediction 182 207 - -
Aed1g0940 496 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Aed1g0940 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Aed1g0940 496 MobiDBLite consensus disorder prediction 398 418 - -
Aed1g0940 496 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0940 Aed-Chr1 9767752 9771755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0940 24 161 MYB Transcription Factor Family AT2G32460 70.470 1.80e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g0940 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0940 K09422 - gmx:100784779 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0940 1 9767752 9771755 Aed1g0940 1 9767752 9771755 ECH