Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0932 ATGAAGAAATTTATGGTCTTGCACCTTGTCACATGGATTTGGCTATGTGGAGTTGCTCACAGCAAAAGGCCTGCCAGTGTGAACATTGGTGCGGTTTTTTCTTTCGATTCTGTCATAGGTAGAGTTGCCAAAACGGCTATGGAAATGGCCGCTTCTGATGTCAATGAGGACCCCACTGTTCTCAAGGGAACCAAACTCAGCTTGATTATGAAAGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGGTGCCAACCCTCAACCTTATCACTTTTTGTTGTTGTTGTTAGAGTTGCAAACTAATAATACAAATCCCTGCTCTTTTGCCGTTTCTAAGTTCATGCCAATTTATGGAGTGTATAACATAACCTGGCGTGATCAGGGGAAGGTCATGCCTATTAATGGAGTGTATTCTCTAACCGTCTTCCGATGGTTCCCACCTTTTCCAAGGGCTTTTCAGGTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCACAGTCATCTGCCGTAGCTCACACGGTTTCTCAAATTGCCGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCTACCCTGTCCTCCCTCCAGTTTCCATTCTTTGTTAGAACTACACAAAGTGACTTGGCACAAATGACTGCAATGGCTGATATAATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTGGATGATGATTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAGCTTGAAAAAAGGAGATTAAAAATTTCTCATAAACTGCCTTTAAGTATTAAGTTTGATCTGGATGAAATCACTAACTTGCTGAATCAATCCAAAGTGTTTGGTCCTCGTGTGTATGTTGTTCATGTCAACCCTGATCCAAGATTCATAATTTTTTCCATTGCCCATAAACTTCAAATGATGGCCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCAACTACACTAGATTCATTATCCCCAGTGAATCAGACCTCTTTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCCAGCAAAAAGAAAACTTTTTTTTCTCGATGGATGAAAATGAAAAAAGAAGGATTAGTAAATACTAGTTTGAACTCCTATGGAGTTTATGCTTATGATACAGTTTGGGCAGTTGCACGTGCAATTGATAAATTCATCAAAGTACATAATAATATTACCTTCTCGCTTCCTGATAACTATAACCTATCTCACACGGTAGGAATCAGTATTCAGCTTGACAAGCTTAAAATCTTTGCTGGTGGATCTGATCTTGTCGACATATTATTACAATCAAATTTTACTGGTGTGAGTGGCCAACTTCATTTTAATTCTGACAGAACTATTGTAAGTGGTGGTTATGACATTATCAATGTCAATCGGATGGGAATTACCAAGGTTAGCTTTTGGTCTAATAATTCAGGACTTTCAGTTGTACCTCCTGAAGCTCTTACAAAAAGGAAATATAACAAGTTTTCTCTAGATCAGAAGGTTGGCAATATTACTTGGCCAGGTGGAATGACAGATCGACCTCGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTCGTAACTGAACTGCAAGATAGTCATCAAATTCAGGGGTACTGCATCGATATCTTCAAGAAAGCCCTAGAATTTATCCCATATGAAGTTCCATATGTGTTCAAGCCTTTCGGGAATGGTAAAGCAAATCCCAATTATGACGCACTAGTGAAAATGGTTGATGAAAATGTATATGATGCAGTTGTTGGAGACATTGCAATTGTGACAAATCGTACAATGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAAGATCAAATGCTTGGGTGTTCCTCCAACCATTTACTGCAGATATGTGGTGTGCCACTGCTGCATCATTTTTGGTGGTTGGAGTTGTTATATGGATTCTTGAGCACCGAGTGAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTGACAATGTTAATGTTCAGCCTCTCAACATTGTTTAAGAAAAATCAGGAAGATACCGTAAGCTCACTCTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCGAGTTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACTGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTGGGATCATTTGCTTACAACTATCTGACAGATAATCTTTATGTACACAAATCAAGACTTGTTTCCCTAGGCTCCCCCAAGGAATACGCTACAGCGCTTCAGAAGGGACCATCTGGTGGAGGGGTGGCAGCTATCATTGATGAGCTTCCTTATGTTGAGTTATTTTTGTCGAATGAAACTGATTTTGGTATTATTGGACAGCCATTCGCCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGAGTCTCCTCTTGCCTTTGACATGTCTACAGCAATTTTGAAACTATCCGAGAATGGAGATCTTCATAAGATACATGAGAAATGGTTCTGCAAAAGGGGTTGTCCTGAAGAAAGGATAAGCAACTCCAAGCCCGACCAGCTTCACTTGATTAGCTTTTGGGGTCTGTATCTCTCATGTGGCGTTGTCTCTCTTGTTGCACTTGTGCTGTTTCTGCTGCGAATGATTCGCCAATACGCTCGCTTCAAACAAAGACAAAAGGATGCTGCTTCTTCATCCTCAGAACCATCAGGCATTCATTGCTCCAAGGTGATTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCAATGTGACAGTCATCAGAACCCCCCCAACTGA 2937 0.4086 MKKFMVLHLVTWIWLCGVAHSKRPASVNIGAVFSFDSVIGRVAKTAMEMAASDVNEDPTVLKGTKLSLIMKDAMCNAFLGSIGGANPQPYHFLLLLLELQTNNTNPCSFAVSKFMPIYGVYNITWRDQGKVMPINGVYSLTVFRWFPPFPRAFQVLEKGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFVRTTQSDLAQMTAMADIIDFNGWKEVIVVFLDDDYGRNGVSALSDELEKRRLKISHKLPLSIKFDLDEITNLLNQSKVFGPRVYVVHVNPDPRFIIFSIAHKLQMMAKDYVWLVTDWLSTTLDSLSPVNQTSFSVLQGVVGLRQHIPDSSKKKTFFSRWMKMKKEGLVNTSLNSYGVYAYDTVWAVARAIDKFIKVHNNITFSLPDNYNLSHTVGISIQLDKLKIFAGGSDLVDILLQSNFTGVSGQLHFNSDRTIVSGGYDIINVNRMGITKVSFWSNNSGLSVVPPEALTKRKYNKFSLDQKVGNITWPGGMTDRPRGWVIADNTKPLRIGVPKRASFVEFVTELQDSHQIQGYCIDIFKKALEFIPYEVPYVFKPFGNGKANPNYDALVKMVDENVYDAVVGDIAIVTNRTMIVDFSQPFASSSLVIVAPINKARSNAWVFLQPFTADMWCATAASFLVVGVVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYNYLTDNLYVHKSRLVSLGSPKEYATALQKGPSGGGVAAIIDELPYVELFLSNETDFGIIGQPFARSSWGFAFQRESPLAFDMSTAILKLSENGDLHKIHEKWFCKRGCPEERISNSKPDQLHLISFWGLYLSCGVVSLVALVLFLLRMIRQYARFKQRQKDAASSSSEPSGIHCSKVIVNFFNFIDEKEEAIKKMFTQCDSHQNPPN 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0932 978 PIRSF IGluLR_plant 1 85 IPR017103 -
Aed1g0932 978 PIRSF IGluLR_plant 150 978 IPR017103 -
Aed1g0932 978 PANTHER GLUTAMATE RECEPTOR 3.7 10 81 - -
Aed1g0932 978 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 81 - -
Aed1g0932 978 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 143 975 - -
Aed1g0932 978 Gene3D - 822 881 - -
Aed1g0932 978 Pfam Bacterial extracellular solute-binding proteins, family 3 545 874 IPR001638 -
Aed1g0932 978 Gene3D - 527 644 - -
Aed1g0932 978 Gene3D - 151 462 - -
Aed1g0932 978 Gene3D - 210 487 - -
Aed1g0932 978 Gene3D - 645 775 - -
Aed1g0932 978 SUPERFAMILY Periplasmic binding protein-like I 23 525 IPR028082 -
Aed1g0932 978 CDD GluR_Plant 532 874 - -
Aed1g0932 978 Pfam Ligand-gated ion channel 875 906 IPR001320 GO:0015276|GO:0016020
Aed1g0932 978 SUPERFAMILY Periplasmic binding protein-like II 512 875 - -
Aed1g0932 978 SMART GluR_14 533 876 IPR001320 GO:0015276|GO:0016020
Aed1g0932 978 CDD PBP1_GABAb_receptor_plant 28 491 IPR044440 -
Aed1g0932 978 PANTHER GLUTAMATE RECEPTOR 3.7 143 975 - -
Aed1g0932 978 Pfam Receptor family ligand binding region 152 472 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0932 Aed-Chr1 9693127 9698522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0932 152 978 Ion Channels AT2G32400 55.822 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0932 K05387 - gmx:100784247 1536.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0932 1 9693127 9698522 Aed1g0932 1 9693127 9698522 ECH
Aed5g0747 5 5580549 5586204 Aed1g0932 1 9693127 9698522 PCT