Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0931 ATGGAGGTGCTGTGGGTCACAAGGCATGGGAGAATGTTTGAGGGGAGGGTGTTGTTGCTCTTGGTTTTGTTCTTGTGGATTCCCACACAAGTTGTGGAGGGAAGGATAGGAGCTACCATTACAAACTCTACTACTTCTTCGGCACCAAAAGTTTTGAGAGTTGGAGCACTGTTTACTCTTAATTCAATAATTGGAAGATCGGCTAAACCTGCACTTATGGCTGCTTTTGAAGATGTTAATGCTGATTCAACTGTTCTCCCTGGCATTCAACTGCAAGTTCTTTTACATGATACAAATTGCAGTGGGTTTGTTGGAACAATGGAAGCTTTGCAGTTAATGGAGGATGAAGTGGTTGCTGCCATTGGTCCACAGTCCTCAGGAATAGCCCATGTGATCTCTCATGTTGTGAATGAACTCCATGTCCCTCTTGTTTCATTTGGGGCAACAGATCCTTCTCTATCTTCCCTTCAGTATCCGTATTTTGTTCGCAGCACACAAAGTGACTATCATCAAATGCATGCAATTGCAGACTTGGTTGATTACTACAGATGGAGGGAGGTAATAGCAATTTATGTAGATGATGACAATGGAAGGAATGGAGTTTCAGTACTTGGCGATGCTCTGTCGAAGAAACGTGCCAAGATCTCTTACAAGGCTCCATTCCCTCCTGGTGCCGCCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTGATGGAATCACGTGTCTTTGTTCTTCATGTCAATCCTGAAACTTTCTTGAATATCTTCTCTATTGCTGAGAAGCTAGGAATGATGAACAGTGGCTACGTGTGGATTGCAACAGATGCACTTGCTTCAACACTTGATTCATCAGAGCCAGTTGATTCTGACACAATGAATCTCCTACAAGGGGTTTTGGTTCTAAGGCATCACACTCCTGATACTGATGAAAAGAAGAGTTTTCTCTCAAGGATGAAGACACTCAAAACCAAGGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATATGATACCGTTTGGTTAGTAGCTCGTGCTCTTGATGCTTTTATGAAGAAAGGTGGTGTGGTAACTTTCTCCTCTGATCCTAAGTTGCACGACGCCAATGGAAGCATGTTGCATTTACAATCACTTCGTGTTTTCGATGACGGCCCTATGTTTCTCGAGACACTTCTGAGTTCCAACTTCACTGGTCTGAGTGGAACGGTTCAGTTTGATGTTGAAAGGAATAGATTTCGTCCTGCGTATGATATCTTGAATATTGGTGGAACTGGAATGAGGAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAGATTTTGTATTCGAAACCACCCAACACTTCAACAAGCAGCCAGCAACTTTATGGTGTTATATGGCCTGGAGAAACTACAGCTAAACCAAGAGGTTGGGTTTTTCCTAACAATGGAAAGCCATTGAGAATAGCAGTTCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCTCCTGGAGTAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTACGCTGTCCCACGAGAATATATACTATTTGGACCTGGTAATAGAAATCCCAGCTATGATGACCTTGCAAATCAGGTTGCACTAAATATCAAATCTAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTTTGTTACTGGTGCCTTTTTTGTCTTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCAGAGTTCCGTGGAGAAAACACAGTGAGTGGTCTTGGGAGATTGGTGCTAATCATATGGCTTTTCGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCGCAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGCAAGTATTTGACAGAGGAACTCAATATACAACCATCAAGGATAGTTACGTTGAAAAACATGGAGGCATATATTGACGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTATGGCAGTTGTTGATGAGCTTCCTTATATTGAAATCTTAATGTCAAGTACCAACTGTAAGTTCAGAACCGTTGGCCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCAAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAGATTCATGACAAATGGCTTTTACAACATGATTGTTCTGCACCAGATACTGAAGCTGATGTAAATGAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTAATATGTGGCATTGCATGTCTCATTGCTTTGGCTATATTCTTCACTAGAGTGCTATGCCAATACACAAAATTCAGCCCAGAAGCTGAGCAGCAAGATGATGAAGAAATTTCACCAAATAGGCCTACCAAAGGTAAAGGGCTTTTCAAAAGCACTACTAGCTTCAGGGACTTGATAAATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAGGCACAAGCGTAAGAAAAGGAGACGCAGCATGAGCTCAGATGGCCAATCTAGTTCACCCACCTCCCAACTCTAG 2676 0.4253 MEVLWVTRHGRMFEGRVLLLLVLFLWIPTQVVEGRIGATITNSTTSSAPKVLRVGALFTLNSIIGRSAKPALMAAFEDVNADSTVLPGIQLQVLLHDTNCSGFVGTMEALQLMEDEVVAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYHQMHAIADLVDYYRWREVIAIYVDDDNGRNGVSVLGDALSKKRAKISYKAPFPPGAAKKDISDLLNGVNLMESRVFVLHVNPETFLNIFSIAEKLGMMNSGYVWIATDALASTLDSSEPVDSDTMNLLQGVLVLRHHTPDTDEKKSFLSRMKTLKTKETPSFNSYALYAYDTVWLVARALDAFMKKGGVVTFSSDPKLHDANGSMLHLQSLRVFDDGPMFLETLLSSNFTGLSGTVQFDVERNRFRPAYDILNIGGTGMRRIGYWSNYSGLSVVAPEILYSKPPNTSTSSQQLYGVIWPGETTAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYAVPREYILFGPGNRNPSYDDLANQVALNIKSSPWSFLKPFTAQMWFVTGAFFVFVGTVVWILEHRHNPEFRGENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVMAVVDELPYIEILMSSTNCKFRTVGQEFTKSGWGFAFKRDSPLAVDMSTAILQLSENGDLQKIHDKWLLQHDCSAPDTEADVNELSLSSFWGLFLICGIACLIALAIFFTRVLCQYTKFSPEAEQQDDEEISPNRPTKGKGLFKSTTSFRDLINFVDKKEKEIKEILRHKRKKRRRSMSSDGQSSSPTSQL 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0931 891 Gene3D - 603 662 - -
Aed1g0931 891 Gene3D - 556 602 - -
Aed1g0931 891 PIRSF IGluLR_plant 555 602 IPR017103 -
Aed1g0931 891 PIRSF IGluLR_plant 598 890 IPR017103 -
Aed1g0931 891 PIRSF IGluLR_plant 12 556 IPR017103 -
Aed1g0931 891 Pfam Ligand-gated ion channel 601 801 IPR001320 GO:0015276|GO:0016020
Aed1g0931 891 Pfam Bacterial extracellular solute-binding proteins, family 3 624 769 IPR001638 -
Aed1g0931 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Aed1g0931 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Aed1g0931 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Aed1g0931 891 PANTHER GLUTAMATE RECEPTOR 3.4 40 553 - -
Aed1g0931 891 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Aed1g0931 891 MobiDBLite consensus disorder prediction 824 843 - -
Aed1g0931 891 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Aed1g0931 891 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Aed1g0931 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 557 871 - -
Aed1g0931 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 553 - -
Aed1g0931 891 PANTHER GLUTAMATE RECEPTOR 3.4 557 871 - -
Aed1g0931 891 Gene3D - 71 415 - -
Aed1g0931 891 MobiDBLite consensus disorder prediction 867 891 - -
Aed1g0931 891 Coils Coil 856 876 - -
Aed1g0931 891 Gene3D - 167 440 - -
Aed1g0931 891 Gene3D - 663 771 - -
Aed1g0931 891 SMART GluR_14 488 770 IPR001320 GO:0015276|GO:0016020
Aed1g0931 891 SUPERFAMILY Periplasmic binding protein-like II 463 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0931 Aed-Chr1 9680275 9689827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0931 16 738 Ion Channels AT1G05200 60.556 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0931 K05387 - gmx:100799912 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0931 1 9680275 9689827 Aed1g0931 1 9680275 9689827 ECH
Aed1g0931 1 9680275 9689827 Aed5g0747 5 5580549 5586204 PCT