Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0929 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGTTGATCGGAAGAAACGGAACTGTTGGTGGCTTTGGATTATCTTCAGGCCTCTCTCTTGGCCAGATTGAAAACCATAAGGGCTCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGTTGGAAGCTGGTCAGCTCCACGCACTGGACATGCCTCAGAACACTTCAGAGAGCGATATCCCTAGAATCCGTGAAGATGAATTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGGTGCTTCCGGTGAAGACCAGGACCCCCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGCTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAGCATGAGCGGCATGAGAACACAAACCTGAGAACTGAAAACGAGAAGCTTCGTGCAGACAACATGAGGTTCAGGGACGCTCTGGGCAATGCCTCGTGCCCTAACTGTGGTGGACCAACCGCTATTGGGGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGACTCAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCAAAGTATGTTGGGAAGCCAGTGGTGAGCTATCCACTGGTTTCTCCTTCATCTGTTCCTCCAGGCCGTCCACTAGAGCTTGGTTTTGGTGGGGAAATGTACGGTGGAGCTGCTGCAGGAGATCTTCTTAGGTCAATAAGTGGACCCACTGAAGCTGACAAGCCAATCATAATAGAGCTAGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAGATGGGTGAGCCTCTCTGGCTGACTACCCTCGATGGCACCACTGTGCTCAACGAGGATGAGTACATCAGGTCCTTCCCTCGTGGGATTGGTCCCAAACCCGCTGGTTTCAAGTGTGAAGCTTCTAGGGAAACATCTCTTGTTATCATGAATCATGTTAACCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACGGTGTTCTCTGGCATAGTCTCAAGAGCAATGACTTTGGAAGTGCTATCTACAGGGGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTGCCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGCAAGCAGCACGGTGACGGGACTTGGGCAGTAGTGGACGTATCATTGGATAATTTGCGTCCTAGTCCTTCAGCCAGATGCAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGCCATGCATTTGGTGCAAAACGTTGGATTGCAACCTTGGACCGACAATGTGAAAGGCTAGCTAGTGCCATGGCAACAAACATGCCCTCAGTGGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCATCAACTGCACACACATGGACAACACTGTCTGGAACCGGTGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCACCTGGCATAGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCTAGAAGTGAGTGGGACATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGGCGAGACACGGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCGAATTCAAGCCAAAGCAACATGCTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCACCAGTGGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGACTACGTGGCACTTCTCCCTTCAGGCTTTGCTATACTTCCAGATGGGACCACTGCACATGACAGCACTGGACATCATGGTGGATCTCTCTTGACTGTGGCCTTCCAAATTCTAGTCGATTCGGTTCCAACTGCTAAGCTTTCTCTTGGATCCGTTGCTACTGTTAACAACCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTGTCTGGTGAAGTTGCTTAA 2313 0.4864 MPAGIMIPARNMPSLIGRNGTVGGFGLSSGLSLGQIENHKGSESQRSVEMFQPNLLEAGQLHALDMPQNTSESDIPRIREDEFDSATKSGSENQEGGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTNLRTENEKLRADNMRFRDALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSVPPGRPLELGFGGEMYGGAAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETSLVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNMPSVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHDSTGHHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0929 770 Coils Coil 161 193 - -
Aed1g0929 770 ProSiteProfiles START domain profile. 286 517 IPR002913 GO:0008289
Aed1g0929 770 CDD START_ArGLABRA2_like 290 513 - -
Aed1g0929 770 SUPERFAMILY Homeodomain-like 99 167 IPR009057 -
Aed1g0929 770 SUPERFAMILY Bet v1-like 286 516 - -
Aed1g0929 770 Gene3D - 344 511 IPR023393 -
Aed1g0929 770 MobiDBLite consensus disorder prediction 84 118 - -
Aed1g0929 770 CDD homeodomain 110 168 IPR001356 GO:0003677
Aed1g0929 770 Pfam Homeodomain 110 165 IPR001356 GO:0003677
Aed1g0929 770 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 64 767 - -
Aed1g0929 770 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Aed1g0929 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 767 IPR042160 -
Aed1g0929 770 Pfam START domain 296 514 IPR002913 GO:0008289
Aed1g0929 770 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Aed1g0929 770 Gene3D - 97 184 - -
Aed1g0929 770 SMART HOX_1 108 171 IPR001356 GO:0003677
Aed1g0929 770 SUPERFAMILY Bet v1-like 534 762 - -
Aed1g0929 770 SMART START_1 295 514 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0929 Aed-Chr1 9666754 9673658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0929 50 770 Homeobox Transcription Factor Family AT1G05230 79.396 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed1g0929 START 3.2e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0929 K09338 - gmx:100809556 1420.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0929 1 9666754 9673658 Aed1g0929 1 9666754 9673658 ECH
Aed1g0929 1 9666754 9673658 Aed5g0751 5 5614370 5620988 PCT