Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0920 ATGAGAGTTGCCATTGTCACAAGAACAAACCATTTTTTCATTGAAGTAGGTACCCAAGAAACAGTATTAGCAATCAAGAAGAAAATAGAACAAATCCATGGGATTCCAGTGCCTTCACAAATCCTAACAGTTTCTGGGTGGGAACTATTGGATGGATTAGACATGGAAGATTACCCAATAGTGATTGAAGGTACAAAAGTTGACCTCACCATCAAACCAGTGGCAGTGGAGCCACACCCTAACAAAATGCAAATCACAGTTAAGTTTTCAGCTAGAAAGTTTAACATTGAGGTGGACAGAACAGACACTGTTCGAAGCTTGAAGGAAAAAATTCACATCATTGAAAGCACACCCATCAAAAGAATGACACTGTACTTTTCAGGGATAGAATTGGATGAAGATTTCAGAATCTTAAGTGAGTATGGCATACGCGAATTTTCTGAAATTGTTGTGTTCCTCAAGCCCTTGAATCGATCAAGAGAAGAGCCTCCCACAAGGAAGTTAAGCTTGGTAGTACAAACTTCCTCTAGTTTGCTTAATGCTGCCACCATTCCTCTGGAGATGAGAGATGCAAGCACAGTGGGTGACTTGAAGCAGTTACTGATAAGCAGAAAAACTCTGCCAGCTGATGACTATTTGTTCATACACAGGCAGAGAATCATGCGTGATAGCTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGGACAGTTAGTCGCAGTGGGTATGCATGA 756 0.414 MRVAIVTRTNHFFIEVGTQETVLAIKKKIEQIHGIPVPSQILTVSGWELLDGLDMEDYPIVIEGTKVDLTIKPVAVEPHPNKMQITVKFSARKFNIEVDRTDTVRSLKEKIHIIESTPIKRMTLYFSGIELDEDFRILSEYGIREFSEIVVFLKPLNRSREEPPTRKLSLVVQTSSSLLNAATIPLEMRDASTVGDLKQLLISRKTLPADDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRSGYA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0920 251 ProSiteProfiles Ubiquitin domain profile. 168 240 IPR000626 GO:0005515
Aed1g0920 251 SUPERFAMILY Ubiquitin-like 76 162 IPR029071 -
Aed1g0920 251 SUPERFAMILY Ubiquitin-like 179 243 IPR029071 -
Aed1g0920 251 SUPERFAMILY Ubiquitin-like 3 74 IPR029071 -
Aed1g0920 251 Pfam Ubiquitin family 8 71 IPR000626 GO:0005515
Aed1g0920 251 Pfam Ubiquitin family 85 155 IPR000626 GO:0005515
Aed1g0920 251 Pfam Ubiquitin family 179 240 IPR000626 GO:0005515
Aed1g0920 251 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 249 - -
Aed1g0920 251 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 249 - -
Aed1g0920 251 CDD Ubl_ubiquitin_like 85 152 - -
Aed1g0920 251 Gene3D - 156 247 - -
Aed1g0920 251 CDD Ubl_ubiquitin_like 3 69 - -
Aed1g0920 251 CDD Ubl_ubiquitin_like 183 241 - -
Aed1g0920 251 Gene3D - 1 69 - -
Aed1g0920 251 SMART ubq_7 168 243 IPR000626 GO:0005515
Aed1g0920 251 SMART ubq_7 1 72 IPR000626 GO:0005515
Aed1g0920 251 SMART ubq_7 83 154 IPR000626 GO:0005515
Aed1g0920 251 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Aed1g0920 251 ProSiteProfiles Ubiquitin domain profile. 83 154 IPR000626 GO:0005515
Aed1g0920 251 Gene3D - 82 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0920 83 154 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 7.40e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0920 - - gmx:100781557 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0920 1 9602842 9603597 Aed1g0920 1 9602842 9603597 ECH