Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0915 ATGGATCCTCTATGTGAGTTTTGTGGGGTGGTGAGAGCTGTGGTTTACTGCGAGCCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCATTGTCTCGCAGGCATTCGCGTTCCCTCCTTTGCGACAAGTGCAATTCCCAGCTGGCGGTGATCCGCTGCATGGATCATAAGTTGTCATTGTGTCAAGGTTGTGACTGGAACCCAAATGACTGTACTGCATTGGGACATAGGCGCATTGTGTTGAATTGTTACACCGGTTGTCCCTCTTTGGCTGAGTTTTCTAGGATGTGGTCCTTTGTCATTGATGCTAGTTCCTCACTTGGTGCCTGGGAATCGAATGCTGGTACTTTGCCAAAAAGTGAGAGCTTCACTAGCCAGTGTTTGGATCATAATGGTGCTTCCTTTAATTACATGCCTTACTGCAAAGACGAAGCACTTTTCTTTCCTCAAGACTCAACCCAGCCAAAGCTGCAGGAATGTCCTAATCTCGGAATTCATGATGGGGATGAACTTTGTGAAGGTCTCAATGTGGATAACGTTCAATTAAACTTTGATAGTGCTGATGAAATATTTGGCTGTTCACAAGCTTCCACAAGATACCTTGAAGATGGAGGAATGGACTGTCTATTGATGGATAAAAACATAACAGTCACAGAATCTAGTTCACTTATTGAGAGTGCCATGGAGGCCTCATCATCTATCCAACAAGATTGTGTGGCTTTTCAATCATCCAGGGCTAGTGGGTCAGCTAGTGTGATGCAGGTCATCAACAGTAATACAAATTGTGTACTTATGAATCCTAGCTGCACTAGAAACATCAGTATGGGATTTCCTCAGGGTCAAGTTCACTCAAACATACCACTTCAGTTTCCCAACATTGTTGGTGAAAATAGTTCTACTGAATTTCAAGACTGTGGGTTATCGTCTGTGTTTCTGCCAGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACTAGCAAGGGATAAAGCTAAAATGCGATACAAAGAGAAAAAGAAAACTAGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCCGGTGAAGCATATGATTATGACCCTCTTCTGACAAGGGATATCTAA 1182 0.4349 MDPLCEFCGVVRAVVYCEPDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQLAVIRCMDHKLSLCQGCDWNPNDCTALGHRRIVLNCYTGCPSLAEFSRMWSFVIDASSSLGAWESNAGTLPKSESFTSQCLDHNGASFNYMPYCKDEALFFPQDSTQPKLQECPNLGIHDGDELCEGLNVDNVQLNFDSADEIFGCSQASTRYLEDGGMDCLLMDKNITVTESSSLIESAMEASSSIQQDCVAFQSSRASGSASVMQVINSNTNCVLMNPSCTRNISMGFPQGQVHSNIPLQFPNIVGENSSTEFQDCGLSSVFLPGESPWESNLEGTCPLARDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLLTRDI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0915 393 CDD Bbox1_BBX-like 4 47 - -
Aed1g0915 393 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 390 - -
Aed1g0915 393 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Aed1g0915 393 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Aed1g0915 393 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 390 - -
Aed1g0915 393 Pfam CCT motif 337 379 IPR010402 GO:0005515
Aed1g0915 393 SMART bboxneu5 1 47 IPR000315 GO:0008270
Aed1g0915 393 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0915 Aed-Chr1 9546431 9550801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0915 1 387 C2C2-CO-like Transcription Factor Family AT3G21880 44.332 2.62e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g0915 CCT 1.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0915 - - gmx:100804738 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0915 1 9546431 9550801 Aed1g0915 1 9546431 9550801 ECH