Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0900 ATGCAAGTCACGTCCTCACAAAGCCACATGAAAGCTGAGCTAAAGGGCACGTCCATTTCCTTTCAAAACCCTACCACTACTCTCTTTAGCAGCAGCACCACCCACAACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTCGGAAGCCTCGATGGGGCTTGTATCGAGAAGCTCTTGCTCCACTGCGCCAGTGCTTTGGAGAGCAACGACATCACCTTAGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCTCCTGTTGGGGACACTAACCAAAGACTCACCTCGTGGTTTCTAAGGGCCTTAATCTCTAGGGCTTCGAGAATTTGCCCCACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAGAGAAGGTTGATGAGCGTGACCGAGCTCGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGGTATTGTGCATCCAATAATGAAATTTACAAGGCAATAGCGGGATTCCAAAGGGTGCATATTCTAGATTTTAGCATAACTCATTGCATGCAGTGGCCTACTTTTATAGATGCGTTAGCAAAAATGCCTGAGGGACCCCCTTCGCTTAGAATAACGGTTCCATCTTGTAGACCACAAGTACCCCCCTTGGTCAATATATCAATTCATGAGGTTGGGTTACGTTTAGCGAATTTTGCTAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAACATAGGACCATTAACACCAGCGGAATTGAGCGATATTGAATCAACTAGCTTTCAATTTGAAGCAATGTTGAGTCTCTTGAATCCTACTATGCTAAACCTTAGGGAAGATGAAGCTTTGGTTATAAATTGCCAAAACTGGCTACGCTATTTGTCTGATGATAGAAAGGGAATTGGCCATGGCCGCCAAAGTCTTTCCCTTAGGGATGCTTTTTTGAATCTAATCAAAAGTCTTAACCCCCGGATTGTGCTCTTGGTTGATGAGGATTCTGATCTCAGTGCATCAAGTCTCGCATCGAGAATTACCACATGTTTCAACCATCTATGGATACCCTTTGATGCATTGGAGACTTTTTTGCCTAAAGATAGTTGTCAGAGGTCAGAGTTTGAATCCGACATAGGGCAGAAGATTGAGAACATCATAAGCTATGAAGGGCGCCAAAGAATAGAGAGGCTGGAATCTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGATACCTAAGTGTTCCGTTTTGTGATGAAACTGTTAGGGAAGTTAAAGGGTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAGGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACCGCTTGGGTCCCCTGTGATATGAGGGATCATCATATCGGTATGGATGCAAACCTGTCTTAA 1410 0.4489 MQVTSSQSHMKAELKGTSISFQNPTTTLFSSSTTHNNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAIAGFQRVHILDFSITHCMQWPTFIDALAKMPEGPPSLRITVPSCRPQVPPLVNISIHEVGLRLANFAKFRDVPFEFNVIGNIGPLTPAELSDIESTSFQFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGIGHGRQSLSLRDAFLNLIKSLNPRIVLLVDEDSDLSASSLASRITTCFNHLWIPFDALETFLPKDSCQRSEFESDIGQKIENIISYEGRQRIERLESGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCDMRDHHIGMDANLS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0900 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 454 IPR005202 -
Aed1g0900 469 ProSiteProfiles GRAS family profile. 46 453 IPR005202 -
Aed1g0900 469 Pfam GRAS domain family 56 452 IPR005202 -
Aed1g0900 469 PANTHER OS05G0500600 PROTEIN 11 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0900 Aed-Chr1 9491783 9493192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0900 38 454 GRAS Transcription Factor Family AT3G49950 45.070 2.24e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g0900 GRAS 8.8e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0900 - - gmx:100802093 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0900 1 9491783 9493192 Aed1g0900 1 9491783 9493192 ECH