Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0895 ATGTTAGCAAAAGCTCCTAACAAAGGGGATGGATCTAAGTCCCTAGGTAAGATCCTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCAGCAACGATGTGGATAAGCCGGTTCGCAAAGTTCCAGCCAAGGGATCGAAGAAGGGGTGTATGAAAGGTAAAGGGGGGCCTGAGAACTCACGGTGTAACTACAGAGGTGTCAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGAAACAGGCTTTGGCTAGGTACTTTCCCCACTGCCATTGGAGCTGCGCTTGCATATGATGAAGCGGCCAGGGCAATGTATGGTACCTGTGCCCGTCTCAACTTTCCCAATGTTTCGGTTTCCAGTTTCTCTGAGGAATCTTCCAAAGATTCTCCAGTCGTGAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAGTCCATGATTTCACCAACTAACTCTGGGGTAGGCGCAGAAGATGATGTTGATATGGAGCCCATCTCCTTATCCTTGAGTGTAAAACATGAAAATGGGGAAGGTGAGTCCGGGATAAGTTCGTCCCCTCCTTCCTCATGA 594 0.4848 MLAKAPNKGDGSKSLGKILAKWKEYNAQLDSSNDVDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGTCARLNFPNVSVSSFSEESSKDSPVVNHSGSSMAVSANESMISPTNSGVGAEDDVDMEPISLSLSVKHENGEGESGISSSPPSS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0895 197 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Aed1g0895 197 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 169 - -
Aed1g0895 197 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 MobiDBLite consensus disorder prediction 33 59 - -
Aed1g0895 197 MobiDBLite consensus disorder prediction 127 197 - -
Aed1g0895 197 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 MobiDBLite consensus disorder prediction 127 160 - -
Aed1g0895 197 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Aed1g0895 197 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Aed1g0895 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0895 Aed-Chr1 9455952 9457808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0895 7 121 AP2-EREBP Transcription Factor Family AT2G40350 61.345 3.04e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed1g0895 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0895 - K09286 gmx:100527471 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0895 1 9455952 9457808 Aed5g0778 5 5847380 5849039 PCT