Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0890 ATGAGAAGTGATGATGAGGTTGTGTTCTCCTTCTCCCTTGTTTTTTCTTTGATGCTATGCTTCCAACTCTGTTCTGCTGGAGATACTTTGAAGGCTGGCCAGAAGATAACTCAGGACTCGGCGGAGAACCTTGTTTCATCTAACCGCACATTTGAGCTTGGCTTCTTTTCTTCAAGTGTGGAAAAGCAATCACAACTTTACTGGACACTTGATGAAATTGATTATAGAATCGCTAGATTGTTGGCAAACGCGACCTGGGGTAAGACATCCTACAATTTTTCAGGAGTAACGTTCTATGCAGAGGCACCTTACAGTTTCGAGAATTCAAGGTTATTAATGAATTCTAGTGGGGAGTTAGAATTTCTGAGGTGGGATAAGGAAGACATGCAATGGAATAAGCCCTGGTCAGGGTCGGGGTCAGCTGACAAATGCGACATACATAACTATTGCGGGAGCTTCGGCATCTGTAACAAAAACAATTTGAATTTGAATCTGCATCATTGCAAATGCTTACCAGGATTCCGACCCAGGATCGCTGGAGATATCCAAGACCAAGGGTGTGTCAGAAAATCAACATCTTGTATTGACAAGGACGTGACCTTCCTCAACTTAACCAACATAAAAGTGGCTGTTTACCCAGACAAAGAATTCCATAACAACATAACAGAAGCAGAATGTCAATCCTTATGCCTCAACAATACCAAGTGTCCCAAGTCTCAGTGCCAGGCATATTCATTTAGTAATAATACGTCTATCTATGAATCTGATAGTGTACCATTTGCAAAATCTTGTGAACCTTGCGGAACCTACGTGATTCCTTATCCGCTAAGCACTGGGACAAACTGTGGAGACCCCATGTACAAATACTTCAATTGTAATAAATCCACAGGCCACGTTACCTTCATGATGCCCCGAGGAACATCATACAAAGTTATTGGAATCGATGAAGATACCAGAATGTTTTACATTCAATCAAATGGTTCACACTCATGTAGTTACATCAATCAAAATAATACGCCTAATTTTCCATTTAATGTAGCTGATAAGTGTTCTAAATATGATGATGAGGATGGAATGATTAAAATCAATTGGCTACCAGCACCAGAACCGCCCTGTACTAAGCTTATAGACTGCAACAATTGGCCCCATTCGACATGCAGATCAGCAACAAGTGAAGGAGGAAGCAGGTGCCATTGTGATTCAAACTATAAGTGGAGTAACACAAACATGAGTTGCATCAAAGAAAAGCCTTCAACCAACCGAATGGCGTTGATTCTTATAGTAGTTCTTAGTGGCATTGCTATTCTGGCATGCATGATAGCATTTGCCATGGTGCGGAGAAAGCGAAAAGCTCATAAGCTTGCTCAGGAAAGCACCCGAATTCAGGAGAGCTTGTACGAGAGTGAAAGACAAGTGAAAGAGTACGCTTTGGATGGACTTTTTTCAACCAAATCCGATGTTTTCAGCTTTGGAGTAGTCATTATAGAGATTCTTAGTGGAAAAAGGAACACCGGATTCTATCAGTCCAAACAAATTTCTAGCCTTTTGGGTCATGCGTGGAAGTTATGGACAGAGGATAAGCTACTGGATTTAAAGGACCCATCCATTGGTGAAACATGCAACGAAAATCAATTCATTAAGTGTGCAGTTATTGGACTATTATGCATACAAGATGAACCAGGTGATCGGCCAACTGTGTCCAATGTTTTGTCAATGCTTGACATAGAGACAGCAACAATGCCAATTCCGACGCAGCCAACTTTTTTTGTGAACAAGCGTCTTTCTAGCACAGCTTCCTCTTCTAGCAAAGCAGAAATAAGTTTGCAATTTGATAGCAGTTACCAAGAAGGTCGATAA 1857 0.4114 MRSDDEVVFSFSLVFSLMLCFQLCSAGDTLKAGQKITQDSAENLVSSNRTFELGFFSSSVEKQSQLYWTLDEIDYRIARLLANATWGKTSYNFSGVTFYAEAPYSFENSRLLMNSSGELEFLRWDKEDMQWNKPWSGSGSADKCDIHNYCGSFGICNKNNLNLNLHHCKCLPGFRPRIAGDIQDQGCVRKSTSCIDKDVTFLNLTNIKVAVYPDKEFHNNITEAECQSLCLNNTKCPKSQCQAYSFSNNTSIYESDSVPFAKSCEPCGTYVIPYPLSTGTNCGDPMYKYFNCNKSTGHVTFMMPRGTSYKVIGIDEDTRMFYIQSNGSHSCSYINQNNTPNFPFNVADKCSKYDDEDGMIKINWLPAPEPPCTKLIDCNNWPHSTCRSATSEGGSRCHCDSNYKWSNTNMSCIKEKPSTNRMALILIVVLSGIAILACMIAFAMVRRKRKAHKLAQESTRIQESLYESERQVKEYALDGLFSTKSDVFSFGVVIIEILSGKRNTGFYQSKQISSLLGHAWKLWTEDKLLDLKDPSIGETCNENQFIKCAVIGLLCIQDEPGDRPTVSNVLSMLDIETATMPIPTQPTFFVNKRLSSTASSSSKAEISLQFDSSYQEGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0890 618 ProSiteProfiles PAN/Apple domain profile. 194 264 IPR003609 -
Aed1g0890 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 474 616 - -
Aed1g0890 618 Gene3D Transferase(Phosphotransferase) domain 1 436 581 - -
Aed1g0890 618 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 385 474 - -
Aed1g0890 618 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 56 - -
Aed1g0890 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 56 - -
Aed1g0890 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 251 - -
Aed1g0890 618 Pfam Protein tyrosine and serine/threonine kinase 474 571 IPR001245 GO:0004672|GO:0006468
Aed1g0890 618 ProSiteProfiles EGF-like domain profile. 140 180 IPR000742 -
Aed1g0890 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 385 474 - -
Aed1g0890 618 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 474 616 - -
Aed1g0890 618 Pfam S-locus glycoprotein domain 104 177 IPR000858 GO:0048544
Aed1g0890 618 SUPERFAMILY Protein kinase-like (PK-like) 474 596 IPR011009 -
Aed1g0890 618 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 58 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0890 Aed-Chr1 9428919 9433333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0890 474 604 Receptor kinase-like Gene Family AT4G23140 47.794 1.02e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed1g0890 PK_Tyr_Ser-Thr 2.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0890 - - gmx:100817898 573.163