Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0885 ATGAAGAACTGCGAACTGTGCAAGGTTCCGGCTCGGACCTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGAGCCAACTTCCTCGTCGCGAGACACACGCGCACGCTCCTCTGCCACGCGTGCCAGTCACCCACGCCGTGGAAAGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCGCTCTGCGAGAGGTGCGCCGGCGGAACCACCGAACAGGGCCAAGAGAGCCAAGGAGGCAATGACGACGACATAGACACCGACGACGAGGATGACTACGATGATGATGACGAAAGCGAGGACGAGGTTGCCGCCGACGAGGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCACGCCTCCGCCGCCACCTGCCCCGAGCTCCTCCAGCAGCGATGAGTCGGTTAACCGGTGCAACAACATGGACGAGGTTTCAACTACATTCAAACGGCGTCGCGACGATAATGATTCTCAGGATTCGAATTCGAATAATTGGAGATATGAACAGAGCAAAGAGGAGAGAGGAAGTTGGTTGGTGCGATTGCGACGGCGAACCGGTGATGATGTGGCGGTTGAGCGTCGGAGTGCAAGAGCATCTGAAGACATCTGA 627 0.5917 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSPTPWKASGAALGNTVSLCERCAGGTTEQGQESQGGNDDDIDTDDEDDYDDDDESEDEVAADEDGDNQVVPWSSTPPPPPAPSSSSSDESVNRCNNMDEVSTTFKRRRDDNDSQDSNSNNWRYEQSKEERGSWLVRLRRRTGDDVAVERRSARASEDI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0885 208 MobiDBLite consensus disorder prediction 85 114 - -
Aed1g0885 208 MobiDBLite consensus disorder prediction 76 182 - -
Aed1g0885 208 MobiDBLite consensus disorder prediction 135 149 - -
Aed1g0885 208 PANTHER - 1 205 - -
Aed1g0885 208 MobiDBLite consensus disorder prediction 150 165 - -
Aed1g0885 208 CDD Bbox1_BBX-like 4 45 - -
Aed1g0885 208 MobiDBLite consensus disorder prediction 189 208 - -
Aed1g0885 208 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Aed1g0885 208 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Aed1g0885 208 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 205 - -
Aed1g0885 208 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0885 Aed-Chr1 9378217 9380258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0885 2 129 C2C2-CO-like Transcription Factor Family AT5G54470 52.632 1.73e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g0885 zf-B_box 8.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0885 - - gmx:100801024 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0885 1 9378217 9380258 Aed1g0885 1 9378217 9380258 ECH
Aed1g0885 1 9378217 9380258 Aed5g0783 5 5899205 5900516 PCT