Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0881 ATGGTGAAAAACACGTACTCTGATAAAAGTAGACTTAGGAAAGGAACATGGACACCAGAGGAAGACAAGAAATTGATTGCTTATATTGCCAGATATGGTCACTGGAATTGGAACCTACTTCCCAAGTTTGCAGGTCTTGAGAAGTGTGGAAAAAGCTGCAGGCTAAGGTGGCTGAATTACTTAAGGCCGAATATCAAAAGAGGGAACTACACTCAAGAAGAAGATGAGACTATTATCAAGATGCTCCAACGTCTCGAACATGCGGCACAGGCTATCAAAATGAGCCTTACATATAAACCATTCTACATCCTATTGTCCCGACAAAGCCTTAAAACTTATCCTTTTGATCATGGCACACATATATATGAGATTAAATTCCAACTGGCGATGTCTTCTGCCACTTCTTCATCTTGTTTGTGCTTTCCACACCTTGAATCACGTCGGACTGGAATTCAAACCTGTTTTAAGCAAAGTAAAGGTTGTATAGACCAATGGTCTGTCATTGCTGCTCAGCTGCCAGGGAGAACAGACAATGAAATAAAAAACTACTGGCACACAAATCTCAAGAAGCGATATCAACAGAATAACGTTAAAGCTGAAACTGCAGTTTCGGAGTCGTCAAAGCATCAATCTCCAGTAACAGCACCAAACAATATTGTAGAAGTTCCTTTCCAAAACCTTCCACCAATTACTTCTCAATCCACCGATTCATGCACGACGTCGTCAATAATATCCTCAACCCAGTGTAGCTCTGCAGAAGATCATAGCAATGAAAAGTTTGAGGATCTTCATTATTATGCAGATGAATTTGCTTTTATGAACGACGAAAGCTTCTGGTTGGAACCATATGCTGTTGACATTTCGTGCATTGATCCTTGTGATGTATTGATGGCTGAACCCGATTGGTTTAGCCCTGCGCCTGAAGTAGAACTTTGGAGTCACGATTATGAATACTTTGCGTGA 963 0.4081 MVKNTYSDKSRLRKGTWTPEEDKKLIAYIARYGHWNWNLLPKFAGLEKCGKSCRLRWLNYLRPNIKRGNYTQEEDETIIKMLQRLEHAAQAIKMSLTYKPFYILLSRQSLKTYPFDHGTHIYEIKFQLAMSSATSSSCLCFPHLESRRTGIQTCFKQSKGCIDQWSVIAAQLPGRTDNEIKNYWHTNLKKRYQQNNVKAETAVSESSKHQSPVTAPNNIVEVPFQNLPPITSQSTDSCTTSSIISSTQCSSAEDHSNEKFEDLHYYADEFAFMNDESFWLEPYAVDISCIDPCDVLMAEPDWFSPAPEVELWSHDYEYFA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0881 320 Gene3D - 69 191 - -
Aed1g0881 320 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 163 288 - -
Aed1g0881 320 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 86 - -
Aed1g0881 320 CDD SANT 16 61 IPR001005 -
Aed1g0881 320 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Aed1g0881 320 Gene3D - 14 66 - -
Aed1g0881 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 192 IPR017930 -
Aed1g0881 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 163 288 - -
Aed1g0881 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 86 - -
Aed1g0881 320 Pfam Myb-like DNA-binding domain 163 187 IPR001005 -
Aed1g0881 320 Pfam Myb-like DNA-binding domain 17 76 - -
Aed1g0881 320 SMART sant 66 190 IPR001005 -
Aed1g0881 320 SMART sant 13 63 IPR001005 -
Aed1g0881 320 CDD SANT 163 188 IPR001005 -
Aed1g0881 320 SUPERFAMILY Homeodomain-like 159 198 IPR009057 -
Aed1g0881 320 ProSiteProfiles Myb-like domain profile. 62 188 IPR001005 -
Aed1g0881 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed1g0881 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0881 Aed-Chr1 9343309 9345072 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0881 163 201 MYB Transcription Factor Family AT3G02940 53.846 1.45e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g0881 Myb_DNA-bind_6 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0881 K09422 - gmx:100810385 197.208