Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0880 ATGGTGAGAACCCCTTGTTGTGACAAAAATGGACTCAAGAAAGGCACGTGGACACAAGAGGAAGACACCAAGTTGATCGCATATGTCACTAAGTATGGCCACTGGAATTGGCGCTTACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGCTGAACTATCTGAGGCCAGAGGTTAAAAGAGGAAACTTTAGTCATGAAGAAGAACAAACCATTGTCAGACTTCACGAAAAGCTGGGTAATAGGTACGTATAA 273 0.4542 MVRTPCCDKNGLKKGTWTQEEDTKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPEVKRGNFSHEEEQTIVRLHEKLGNRYV 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0880 90 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Aed1g0880 90 SMART sant 13 63 IPR001005 -
Aed1g0880 90 CDD SANT 16 61 IPR001005 -
Aed1g0880 90 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Aed1g0880 90 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 89 - -
Aed1g0880 90 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed1g0880 90 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed1g0880 90 Gene3D - 6 67 - -
Aed1g0880 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 90 IPR017930 -
Aed1g0880 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0880 Aed-Chr1 9336630 9337190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0880 1 89 MYB Transcription Factor Family AT5G16770 70.787 1.51e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g0880 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0880 K09422 - gmx:100815765 184.882