Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0879 ATGTGTGGTGGGTTTGAGGTTCGATGGTCCGCCATTGCTGCTGAATTGCCAGGGAGGACGGATAATGAAATAAAGAATCATTGGCACACCGCCCTTAAAAAGCGCTTTCAACAAAAGTCAAACGGCAAACGCGGAACTGAAAAAGAAACCAATGTTTCCGAGTCAATATTGTTAGAGAACGACTGCAATATTGACTCAGCTGATACCACAGATGCTGGTGCAGCCATCAAAAACCATGAAAATTCGGTTCTGGAAGGCGATGATGGCCTTTCCTTTTTGGACACATACACGGACCCTGATTATTTGCGTGCCAATTTCTGGACGGAACCTTGTTTAATTGACAATTCCTATGTCCCTCCTCCTGAGTCTGAGCCTCACTTATACCACCTTAGTCCTTTTTCCGATATGGTCGAACTTTGGAGCCACAATGATTTGTATCTGCAGGAATATTCCGAGGGTTTCTTCTACTGA 471 0.4459 MCGGFEVRWSAIAAELPGRTDNEIKNHWHTALKKRFQQKSNGKRGTEKETNVSESILLENDCNIDSADTTDAGAAIKNHENSVLEGDDGLSFLDTYTDPDYLRANFWTEPCLIDNSYVPPPESEPHLYHLSPFSDMVELWSHNDLYLQEYSEGFFY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0879 156 Gene3D - 2 56 - -
Aed1g0879 156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Aed1g0879 156 CDD SANT 8 30 IPR001005 -
Aed1g0879 156 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 56 - -
Aed1g0879 156 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Aed1g0879 156 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 8 56 - -
Aed1g0879 156 SUPERFAMILY Homeodomain-like 7 38 IPR009057 -
Aed1g0879 156 Pfam Myb-like DNA-binding domain 7 31 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0879 Aed-Chr1 9334989 9335506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0879 8 116 MYB Transcription Factor Family AT2G31180 38.182 1.52e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g0879 Myb_DNA-binding 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0879 K09422 - gmx:100815765 196.052