Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0878 ATGACGAGAACCCCTTCCTCTGGAAAAAGTGGACTTAAGAAAGGTTCTTGGACTCCAGAGGAAGATACCAAGTTAATAGCTTATATCACTCGTTATGGCTCTTGGAATTGGCGCCAACTCCCAAGGTTTGCAGGACTGGCAAGGTGTGGAAAGAGCTGCAGACTTAGGTGGCTGAATTATCTTAGGCCGAACATAAAAAGAGGAAACTATACTAAAGAAGAAGAAGAGACTATAATCAGACTTCACGAAAACCTGGGTAACAAAACAGATAATGAAATAAAGAACCATTGGCACACCACTCTCAAAAAGCAATTTGGAAAGAACGCAGTCCACATTAATAAAAAAGTGAAAGCCACAAAATCGAATAGTTCTGGGTCGTCCAAGAAGCAAGATAAGGATTCAATTGAGTCGAGCAATGATGTTTCCTTTCCTTCTCCAACAACTTCTAAAACCTACGACTCTGTCCCTTTGTCCCCGCAACTATCCTCAAGCGAATTCTCGGATTATACCACAGCTGCTACTAACGAAAACTTGCTACTGGAAGACGCGTTCGATTTTCTAGATGCATGCTTAGAGGACGTGAACGACAATATTTTGACAGAGTCATATGTAGCTAACATTTCAAATTCCAACATCCCAGAAAATGGTGATGCTAATTTTCAAGGTTCAGATGCTGCTGCAGAGTCCAACGATTCTTGGGCACTGTTCGAGTCTCCTCTTTCATCGTATAATAACAAAAATCTGGCACTGGAGAATGATGATTTTGCGTTTCTAGAAGCATTGCAGCCAACAACTGAAATTTTTTGGACAGAGGTTTACGCCGCTGACATGTCCCTGGTTCCAAACGAATTACTAGCCCCTCCGGTGAACGAATCCGAGGAACACTTTTCTTCCTTGTACGATGTGGACCTTTGGTGTCAGAGCAATTTCCATTATTTACACGTGGGCTTATTCCAATGA 960 0.4208 MTRTPSSGKSGLKKGSWTPEEDTKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTKEEEETIIRLHENLGNKTDNEIKNHWHTTLKKQFGKNAVHINKKVKATKSNSSGSSKKQDKDSIESSNDVSFPSPTTSKTYDSVPLSPQLSSSEFSDYTTAATNENLLLEDAFDFLDACLEDVNDNILTESYVANISNSNIPENGDANFQGSDAAAESNDSWALFESPLSSYNNKNLALENDDFAFLEALQPTTEIFWTEVYAADMSLVPNELLAPPVNESEEHFSSLYDVDLWCQSNFHYLHVGLFQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0878 319 Gene3D - 7 65 - -
Aed1g0878 319 Gene3D - 66 107 - -
Aed1g0878 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed1g0878 319 CDD SANT 16 61 IPR001005 -
Aed1g0878 319 Pfam Myb-like DNA-binding domain 17 76 - -
Aed1g0878 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed1g0878 319 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 225 - -
Aed1g0878 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 105 IPR017930 -
Aed1g0878 319 CDD SANT 69 101 IPR001005 -
Aed1g0878 319 MobiDBLite consensus disorder prediction 116 163 - -
Aed1g0878 319 SMART sant 13 63 IPR001005 -
Aed1g0878 319 SMART sant 66 103 IPR001005 -
Aed1g0878 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 225 - -
Aed1g0878 319 ProSiteProfiles Myb-like domain profile. 62 97 IPR001005 -
Aed1g0878 319 SUPERFAMILY Homeodomain-like 11 97 IPR009057 -
Aed1g0878 319 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0878 Aed-Chr1 9325327 9327004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0878 1 135 MYB Transcription Factor Family AT2G31180 54.110 1.03e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g0878 Myb_DNA-bind_6 4.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0878 K09422 - gmx:100811124 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0878 1 9325327 9327004 Aed1g0878 1 9325327 9327004 ECH
Aed1g0878 1 9325327 9327004 Aed5g0793 5 5969821 5971817 PCT
Aed5g0791 5 5958693 5960274 Aed1g0878 1 9325327 9327004 PCT