Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0847 ATGGAATCTCAGGTGAAGCACGCCCTTGTCGTCAAAGTTATGGGTCGTACTGGGTCTAGAGGCCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACCGACACATCATGAGGAACGTGAAGGGACCGGTCAGAGAAGGAGACATTCTCACCCTACTCGAGTCTGAAAGAGAAGCAAGAAGGTTGCGCTAG 198 0.4949 MESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0847 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed1g0847 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed1g0847 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Aed1g0847 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed1g0847 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Aed1g0847 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Aed1g0847 65 Gene3D - 1 65 IPR012340 -
Aed1g0847 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0847 Aed-Chr1 9169555 9170784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0847 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.13e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0847 K02979 - gmx:100790570 103.99