Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0839 ATGGGCTGTTGTGTCTCAACAAGCAGTCAGAGTACTTGTAGTAGCCGAAGCAATGGAGACACAATCGCTGCAACGTGTCTAGAAATTGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGATCATGTTGTCTCTTTGCACCAATTACCATCCTTACCAAACAGAATTTTCAGCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGGAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATGTGACCTTTTGTGGTGTGTTTGATGGCCATGGTCCACACGGTCACCTTGTTGCACGCAAAGTCAGGGAAGCCTTGCCGCTAAAACTGCTTTCATTTTTGCATTCCTCCGATTCAGGGCGAAATGGTTCGGGTAAAGCTTGTTTTAGGGGCAACATGAAGCCTGAAAGTGGAGAATCTGAGATAGATTTCTCGGCTGAAGATAAAGAAAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATTCAAGGCTATGGATAAAGAGTTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTATAGTGAAGCAGGTCTGGGATGTTTTGAGCAATGAAGAGGTGGTTGGGATAGTATCTTCAGCACCAACTCGATCATCAGCAGCCAGGATTCTGGTGGATTCCGCAGCTCGTGAGTGGAAACTTAAATATCCAACTTCAAAAATGGATGACTGTGCAGTTGTGTGCCTATTTTTGGATGGAAAAATGGACTCAGAATCTGATTGTGATGAACAATGCTTCTCTTCTGCAACCATCCAGAGAAACCATTCCGATAATCCGGTTGAGTCAGATGACGGTCAAAAGCCTGAGCCATCTTTGCAAAGGAACTTTACCGTGAGATCCTCAGAAGAAAATGGGACCTTTGGAAGAGGAGAAGGAAGGGCATCTGTTAATGTTGAAGGTGGAACATCAGCCACTGAAGATCAAAACTGGTCAGGTCTGGAGGGTGTAACACGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCGGAGGAAAGACTAAACTCTTGA 1083 0.4441 MGCCVSTSSQSTCSSRSNGDTIAATCLEIGFCGQKSARRTFSDHVVSLHQLPSLPNRIFSNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSDSGRNGSGKACFRGNMKPESGESEIDFSAEDKENSMWREAFMKAFKAMDKELRSHPNLDCFCSGSTAVTIVKQVWDVLSNEEVVGIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDCDEQCFSSATIQRNHSDNPVESDDGQKPEPSLQRNFTVRSSEENGTFGRGEGRASVNVEGGTSATEDQNWSGLEGVTRVNSLVQLPRFSEERLNS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0839 360 SUPERFAMILY PP2C-like 57 258 IPR036457 -
Aed1g0839 360 MobiDBLite consensus disorder prediction 277 337 - -
Aed1g0839 360 SMART PP2C_4 55 254 IPR001932 -
Aed1g0839 360 Gene3D - 202 269 IPR036457 -
Aed1g0839 360 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 202 - -
Aed1g0839 360 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 203 348 - -
Aed1g0839 360 MobiDBLite consensus disorder prediction 323 337 - -
Aed1g0839 360 MobiDBLite consensus disorder prediction 294 309 - -
Aed1g0839 360 ProSiteProfiles PPM-type phosphatase domain profile. 66 360 IPR001932 -
Aed1g0839 360 PANTHER ALPHABET, ISOFORM E-RELATED 203 348 - -
Aed1g0839 360 PANTHER ALPHABET, ISOFORM E-RELATED 1 202 - -
Aed1g0839 360 Gene3D - 58 201 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0839 Aed-Chr1 9122579 9127510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0839 203 356 PP2C-type Phosphatase Gene Family AT1G03590 66.456 1.73e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0839 - - gmx:100777448 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0839 1 9122579 9127510 Aed1g0839 1 9122579 9127510 ECH
Aed1g0839 1 9122579 9127510 Aed5g0825 5 6214850 6219762 PCT