Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0827 ATGCAGCGCCACCGCGTCTCCGCCGTGCTTTTTCTAAGCTTATGCTTTAGAATTGCGCTAGTATACGCGCAAGGACAGTCTCATGTCAGTGCTCTGGACCAACATTGGCACCCGGGAACCGCCACGTGGTACGGCGACCCCGAAGGTGACGGCAGCACCGGAGGGGCATGTGGGTATGGTACGTTGGTGGATGTGAAGCCGTTGAAGGCAAGGGTGGGAGCAGTGGGGTCGGTGCTGTTTATGAAGGGTGAGGGGTGCGGTGCTTGCTATAAGGTCAAGTGTTTGGACCATAGCATATGTTCGAAGCGGGCAGTGACAGTTATAATAACGGATGAGTGCCCGGGCTGCCCGTCTGACCGAACTCACTTCGACCTCAGTGGCGCTGCCTTTGGCCACATGGCGCTCGCGGGTGAAAACGGCCAGCTCAGGAACCGAGGTGAAATACCAGTCATTTACCGAAGAACACCATGCAAGTATATTGGCAAAAACATTGCCTTCCATGTCAATGAAGGTTCCACACCATTTTGGCTATCTCTTCTGGTGGAGTTTGAAGATGGAGATGGTGACATTGGCTCCATGCATATACAAGAAGCTGGGTCGAGTGAGTGGCAGCAGATGAATCATGTATGGGGTGCAAGTTGGTGCATTGTGAAGGGGCCATTAAGAGGACCTTTCTCTGTGAAACTAAGCACATCCACAGGGAAAAGCCTCACTGCAAAAGATGTTATTCCAAGCAATTGGACTCCAAAAGCCACTTATACCTCTCGCTTAAATTTCCTTTAA 783 0.516 MQRHRVSAVLFLSLCFRIALVYAQGQSHVSALDQHWHPGTATWYGDPEGDGSTGGACGYGTLVDVKPLKARVGAVGSVLFMKGEGCGACYKVKCLDHSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMALAGENGQLRNRGEIPVIYRRTPCKYIGKNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQEAGSSEWQQMNHVWGASWCIVKGPLRGPFSVKLSTSTGKSLTAKDVIPSNWTPKATYTSRLNFL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 112 127 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 211 228 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Aed1g0827 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Aed1g0827 260 PANTHER EXPANSIN-B3 9 259 - -
Aed1g0827 260 Gene3D - 159 260 IPR036749 -
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Aed1g0827 260 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Aed1g0827 260 SMART dpbb_1 72 152 IPR007112 -
Aed1g0827 260 Pfam Lytic transglycolase 77 151 IPR009009 -
Aed1g0827 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Aed1g0827 260 PANTHER EXPANSIN-LIKE PROTEIN B1 9 259 - -
Aed1g0827 260 Pfam Expansin C-terminal domain 164 244 IPR007117 -
Aed1g0827 260 SUPERFAMILY Barwin-like endoglucanases 29 161 IPR036908 -
Aed1g0827 260 Gene3D - 20 158 IPR036908 -
Aed1g0827 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0827 Aed-Chr1 9049441 9053192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0827 9 216 Expansin Gene Family AT4G28250 64.789 1.06e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0827 K20628 - gmx:100780112 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0827 1 9049441 9053192 Aed1g0827 1 9049441 9053192 ECH