Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0822 ATGGCCTTAGACCAGTATTTTGAGGAGGCTGTGCCACAGTTGGATTCCTTTGAAGATAAATCGTCTCTCGAAACATGGAAATTTGGCAGTGATAGAAATGCAGATTCTGATAGAAATGCTTCCTCTAGTGGTTTTGATTGCAACATCTGCCTAGAGTGTGTGCAAGATCCAGTGGTCACCCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAGTGGCTTAATTTCCAAAGTGCCTCTTATGAAAATGAAGAAAAGAAGCAACAATGTCCAGTATGCAAATCAGAAATATCACAGTCATCCCTTGTTCCATTATACGGCCGTGGCCAAACCACTTTACCTTCTAAAGGCAAAGGCCAGCAAGTAGGGATTGTCATACCAAGAAGACCCCTTGGCCCTTCACTCGATTCTGCAACTGTTTCCCGACCCATTTCTCATGTTTATCATCGCCATTCTCCGAATCATCCTCAACAATTCAACTCAATTCCTGGCAGCTACACTTCAATGTTCAACACGGGTGGTTCACTAGCAAATGCATTTGATACATCATATGGAGTCTTTGGTGAGATGATATATTCAAGGGTCTTTGGAAACCAGACGACTAACGTATACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGATGAGAAGGCATTTAATGCAAGTTGATAGGTCACTCAATAGAATCACTTTTTTCCTCCTTTGTTGCATAGTTTTGTGCCTTCTCTTATTCTGA 753 0.4197 MALDQYFEEAVPQLDSFEDKSSLETWKFGSDRNADSDRNASSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQSASYENEEKKQQCPVCKSEISQSSLVPLYGRGQTTLPSKGKGQQVGIVIPRRPLGPSLDSATVSRPISHVYHRHSPNHPQQFNSIPGSYTSMFNTGGSLANAFDTSYGVFGEMIYSRVFGNQTTNVYTYPNSYDLSGNSNPRMRRHLMQVDRSLNRITFFLLCCIVLCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0822 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 120 IPR013083 -
Aed1g0822 250 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Aed1g0822 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 250 - -
Aed1g0822 250 SUPERFAMILY RING/U-box 46 101 - -
Aed1g0822 250 CDD RING-HC_AtRMA_like 45 96 - -
Aed1g0822 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed1g0822 250 Pfam Zinc finger, C3HC4 type (RING finger) 47 94 IPR018957 GO:0046872
Aed1g0822 250 SMART ring_2 47 94 IPR001841 -
Aed1g0822 250 ProSiteProfiles Zinc finger RING-type profile. 47 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0822 Aed-Chr1 9029754 9030506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0822 41 250 C3H Transcription Factor Family AT4G28270 38.426 2.44e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0822 K10666 - gmx:100785491 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0822 1 9029754 9030506 Aed1g0822 1 9029754 9030506 ECH