Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0813 ATGGGGTGCATAACTTCCAAGAGTGCAGCTGTTGAAGACAGCAGGGAAGGTGTGACAAGGGAATTCACTTCATCCAGCAAAAGGGCCTCGAAGATGAAGGTTTCTGCATCAAATTCTGAGAAAAGGGTCGATGGAGTTAGGGGGAAAGATAAGGTTTTAGATGGTGCTGATATGGAAGTTTCATTAATTGACAGGGAATCCAGTGGTTCGATGCGGTTGAGTGATAATAAGAATGGGAAGAAGAAAAAGGAGAAGCCTGAATTGGCTGTTCTTGATCATCCTGGTCTTGGAAGGATTCCAAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGGTGGCCAACTTGGATTTCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCGCGGAAGGCTGATACTTTTGAGAGGTTTCATAAAATTGGCCAAGGAACCTACAGTACTGTGTATAAGGCACGTGATTTGACTAACCAGAAGATTGTTGCATTGAAGAGGGTACGCTTTGATAATTGTGATGTTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAAGGCTTGATAACATCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACACGATCTTACAGGACTTGCATCAAGTCCCAGCATTAAGTTTTCTGAACCACAGGTTAAATGCTACACACAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTTCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCATCTTAAAGATAGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTTCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCGGAACTTTTACTTGGATCATCTCATTATGGAGTTGCTGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATTGTGGCAGACCTATATTACCTGGAAAAACAGAGGTTGAACAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCATAAGCTGCGAACGCCACATTCAACAGTATTCAGGCCTCCCCACCATTATAGGCGGTGTGTTGCTGAAACATTTAAAGAATGTCCATCTGCTGCCACAAGGCTTATTGAAACCCTACTTTCTTTAGATCCCACGCTTCGAGGAACAGCAGCTAAAGCCCTAAAGAGTGAGTTCTTTTCATCGGAACCCCTTCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGTGGGATGAAGCAACAAGGCACAAAGCTGATGGGGGAAAGGAGCAAAAATTTAGGCCAGGAGGCCGACAAGAGAAAGAACCTCAGACATTTATATTATCCAAAGACAACGCTGACTCTCGTATGTCAATGCAGGCCAAGAGAAAAATGGGTCCATTTTTTCCCCTTTTGCCTTGCATCCTGTCTCTTTTTCATCTCAGTATCTCATAA 1539 0.4347 MGCITSKSAAVEDSREGVTREFTSSSKRASKMKVSASNSEKRVDGVRGKDKVLDGADMEVSLIDRESSGSMRLSDNKNGKKKKEKPELAVLDHPGLGRIPKGLEGEQVAAGWPTWISSVAGEAIQGWIPRKADTFERFHKIGQGTYSTVYKARDLTNQKIVALKRVRFDNCDVESVKFMAREILVLRRLDHPNVIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPSIKFSEPQVKCYTQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFIDPHHKVSLTSRVVTLWYRPPELLLGSSHYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWHKLRTPHSTVFRPPHHYRRCVAETFKECPSAATRLIETLLSLDPTLRGTAAKALKSEFFSSEPLPCDPSSLPKYPPSKEIDTKLWDEATRHKADGGKEQKFRPGGRQEKEPQTFILSKDNADSRMSMQAKRKMGPFFPLLPCILSLFHLSIS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0813 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Aed1g0813 512 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Aed1g0813 512 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0813 512 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Aed1g0813 512 MobiDBLite consensus disorder prediction 1 50 - -
Aed1g0813 512 MobiDBLite consensus disorder prediction 34 50 - -
Aed1g0813 512 MobiDBLite consensus disorder prediction 451 471 - -
Aed1g0813 512 PANTHER CYCLIN-DEPENDENT KINASE 1 493 - -
Aed1g0813 512 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0813 512 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Aed1g0813 512 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0813 512 PANTHER CELL DIVISION PROTEIN KINASE 1 493 - -
Aed1g0813 512 CDD STKc_CDK9_like 135 419 - -
Aed1g0813 512 SUPERFAMILY Protein kinase-like (PK-like) 129 427 IPR011009 -
Aed1g0813 512 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0813 Aed-Chr1 8943240 8948828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0813 127 462 Core Cell Cycle Gene Families AT5G10270 48.580 5.04e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed1g0813 Pkinase 1.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0813 - K08819 gmx:100775462 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0813 1 8943240 8948828 Aed5g0858 5 6486795 6493545 PCT