Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0809 ATGGATCATAAACGGAGAAGTCAACCTTCTTCTTCATCTTCATGCAAACTCGAAAGAAAGATCATAGAGAAAAACAGGAGAACAGAAATAAAGAACCTCTTTTCCGAACTCAACTCTCTTCTCCCTAATCCGAAGGCCAAGGAAGCGATAGCAGTGCGTGATCAAATAGATGAAGCTATCAACTACATCGAAAGCTTAGAGACAAAAGTGAAGATGGCGCAGGAGAAGAAAGAAAGGTTAATGGAAAGGAAGAAGAGAAGTGCTTCTGAAGCACAAGGAAGCGTAAAACCGCCAAAAATGGAGATTCATGAAACGGGTTCTTCGCTTGAAGTCATTCTAACATGCGGCTGCAGGGTTGATAACGAGTCCATTTTCTGCGAAATTATTCAAATATTGCATGAAGAGAACGTAGACGTGATCACTATCAATTCTTCAATGGTTGGAGACTCAATGCTTCATGTTGTGCACGGAGAGGTTGGGCAACCTATGTTTCAATATGGAGTGAGCAAAGTGAGTGAGAGGCTGAAAAGGTTTGTAAACGGAGGAAGCATGAGCTATATGGAAATAGATCCTGAATTTTGTGATTTTGAATTTGGTATCACTGAGACTGATACGTGGGGACTTCTAGCTCCTACGGTAAGCAAGGGTTTCCCACCGAATCTCTTGTAA 669 0.417 MDHKRRSQPSSSSSCKLERKIIEKNRRTEIKNLFSELNSLLPNPKAKEAIAVRDQIDEAINYIESLETKVKMAQEKKERLMERKKRSASEAQGSVKPPKMEIHETGSSLEVILTCGCRVDNESIFCEIIQILHEENVDVITINSSMVGDSMLHVVHGEVGQPMFQYGVSKVSERLKRFVNGGSMSYMEIDPEFCDFEFGITETDTWGLLAPTVSKGFPPNLL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0809 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 186 IPR015660 GO:0003700|GO:0006357
Aed1g0809 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 83 IPR036638 GO:0046983
Aed1g0809 222 Gene3D - 5 94 IPR036638 GO:0046983
Aed1g0809 222 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 186 - -
Aed1g0809 222 Pfam Helix-loop-helix DNA-binding domain 18 66 IPR011598 GO:0046983
Aed1g0809 222 SMART finulus 20 72 IPR011598 GO:0046983
Aed1g0809 222 MobiDBLite consensus disorder prediction 80 100 - -
Aed1g0809 222 Coils Coil 56 90 - -
Aed1g0809 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0809 Aed-Chr1 8911134 8912217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0809 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.450 3.21e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g0809 HLH 9.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0809 - - gmx:100784042 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0809 1 8911134 8912217 Aed5g0862 5 6520066 6521357 PCT