Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0802 ATGGTTGCCGCTCAAAGATTGGAGCTTGGTTTGTGTAAGAGGAGGAGGGGGCTTGGAATTCTGTTGCGGATTGCATTTGGGTGGTGGGTGCTTCTACTGTTCGTTAATCCTGTGGCGGCTCTCAGACCCTTGAGAGAAAGAACTAGGTCCTGGGATGATGAGGGGCTATTTGCAAGAAAGGAGGAGAGCAACTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACCTGGAAGTTTTTAGATATCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAGTACGATGTTGGTGGTGCTCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGGTACTGCAAGATTCTACTCGAGATAAGACGTGGAGAAGAAAACATTCTCTGATTCAGGACATGGAGAAACATTGTAATACTGAAATTGCTGCTCAGATTTCACACTTGCCATCACAAAATAATGAAGGTGAGCATGATCATTTTCATCTAGAAGGGTTAATGGAGAGTCCCTCAGCTGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGGTGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTGACTGCAGGAATACTGGTTGAATCCTTGTTTAATGCTTTTGCAACGGCTGCATTTTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAGGCAAATAGGCCTTTGAGTAATGGAGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCATGGCATCTTGTTGGGAGGCATTCTACTCATGTACGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATATACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGAGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTCGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAGCCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGCCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTCTGATCAGGATACACGACATGCTACTGACTGTGTGACACCTTGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCGCTACCCCCTGCCTAG 1566 0.4144 MVAAQRLELGLCKRRRGLGILLRIAFGWWVLLLFVNPVAALRPLRERTRSWDDEGLFARKEESNLGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVGGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLVLQDSTRDKTWRRKHSLIQDMEKHCNTEIAAQISHLPSQNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSVLYSHGILLGGILLMYEFHNYLRPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRSDQDTRHATDCVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0802 521 PANTHER RING ZINC FINGER PROTEIN 13 521 - -
Aed1g0802 521 Pfam Ring finger domain 488 515 IPR001841 -
Aed1g0802 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 521 IPR013083 -
Aed1g0802 521 ProSiteProfiles Zinc finger RING-type profile. 489 515 IPR001841 -
Aed1g0802 521 SUPERFAMILY RING/U-box 487 520 - -
Aed1g0802 521 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 13 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0802 Aed-Chr1 8865345 8872426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0802 488 520 C3H Transcription Factor Family AT4G00305 47.059 2.94e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0802 K23788 - gmx:100780140 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0802 1 8865345 8872426 Aed1g0802 1 8865345 8872426 ECH