Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0800 ATGCCAGCCCAGAAGCATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAGAAACCGGAATTTGTGTACGTAGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACTGTCATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCAATGCGGCTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGCGCCAGTCGTCGTTCCTTGAGAGACGATCCAAATTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCTGATCCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCATTGGTTAAGAGACGTAAAGATACACCAGGTGCATTTGTAACAAGATCACAGCGTAATCAACGAAACATTCATTCTAGGAGACAAACCCAAGCAATTGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCGTCTTCAGCTGATGAACGAAGTACAGAACACCGACAGAAGAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCCATGGCAAGTCCTGACGGTGGATGCATTGATAGTGATATGGATATAAGTAGAGAAAATCGTGGAATTTCAAGGCAGGTGTCAAAACATGGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGAAGTAACACTCGGCATGGAAGTGGTGGCGGTAGCAATAGCAAAAGTTCTCGTGGTAGTCGATTGTCTAAGTTTGTTGATCATCTCCGAAACTTGGATGAGAACACTGATGAGTTTGATGTCCATCTCATGCTTGTTTCTCTTGACCAACAAAGTACACCAAGTTTGCAGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCACCTTTACGAATACGTTGCTCGTCAGACACCTTTGCCGGTTGAAGGAATTGAGATACTGGCAGTCAAAGGATGCTGCAGTACAAACCGTGATGAGTCAGCCGATGAGAATTCAGCCCTTGCATATGACGAGCTTTCAACGCTGGTTATAGATCCACACAAAAATGAACTGGAAATTTTGCAAGAACATGAGACTCTGGCAGGGCTTAGATCCAAATGCGTATCCAAGATGGGGCATTTTATTATTGCATACAAGCAGAAGGAGGTATCATAA 1242 0.4372 MPAQKHSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKLIQASIAKVVQRQSEALVKRRKDTPGAFVTRSQRNQRNIHSRRQTQAIEGSEDNEEENDNNEKDSSSADERSTEHRQKRRKRWARVRPSQPSSSMASPDGGCIDSDMDISRENRGISRQVSKHGKLTWGRGGFRSNTRHGSGGGSNSKSSRGSRLSKFVDHLRNLDENTDEFDVHLMLVSLDQQSTPSLQQPYLCCRPTLSVKHLYEYVARQTPLPVEGIEILAVKGCCSTNRDESADENSALAYDELSTLVIDPHKNELEILQEHETLAGLRSKCVSKMGHFIIAYKQKEVS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0800 413 MobiDBLite consensus disorder prediction 137 274 - -
Aed1g0800 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 98 IPR013083 -
Aed1g0800 413 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Aed1g0800 413 SMART ring_2 35 74 IPR001841 -
Aed1g0800 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 5 411 - -
Aed1g0800 413 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Aed1g0800 413 PANTHER OS11G0578200 PROTEIN 5 411 IPR044592 -
Aed1g0800 413 MobiDBLite consensus disorder prediction 148 165 - -
Aed1g0800 413 SUPERFAMILY RING/U-box 21 106 - -
Aed1g0800 413 CDD RING-HC_RING1_like 35 75 - -
Aed1g0800 413 Coils Coil 104 124 - -
Aed1g0800 413 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Aed1g0800 413 MobiDBLite consensus disorder prediction 258 273 - -
Aed1g0800 413 MobiDBLite consensus disorder prediction 225 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0800 Aed-Chr1 8855277 8860865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0800 28 98 C3H Transcription Factor Family AT3G23060 35.135 4.06e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0800 K10695 - gmx:100776547 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0800 1 8855277 8860865 Aed1g0800 1 8855277 8860865 ECH