Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0799 ATGAGCAGTGTCTGTGCTGAGCAGCACAAGTTTCACCCTTCTCACCAACTCCTTTCTCCCAAGAAAGCCCTAAGAGAAATTGACATCCCTCCGAGGAAGCTCCTCACTCGCCGTGCCGCCGCCGCCGACATGTACTCCGACGAGACCATGCTGCAGAAGTTCCTCCCTTCCAACGACTCCGACGATGACGACCCTTACTCCGCCGACCACTTCCGGATGTACGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGGAGCCACGACTGGACTGATTGCCCTTTCGCCCATCCGGGCGAAAAAGCACGCCGCCGTGACCCACGGCGGTACCACTACTCGGGAACGGTCTGTCCTGAGTATCGCCGCGGAGGATGCAGCCGCGGTGACGCATGCGAATACGCTCACGGCGTGTTCGAATGCTGGCTGCACCCTTCCAGGTACAGGACTGAGGCCTGTAAGGATGGCAGGAACTGCAAGAGAAAGGTGTGTTTTTTCGCGCACACCCCTCGCCAGCTGAGGATTCTACCGGTTACATCTTCACCCTCTTCGAATGACATGTCATGCAAGAAGAACCTTAACAAACTCCTAAACCATGCTTCAAAATCAAACAACAACAATTGCTGTTTGTTTTGCCATTGTGGTGGTGCTTCTTCTTCAGCTTCTCCAACCTCTACACTCTTTGGTATGTCGCATTTCTCGCCACCACTGTCACCATCCTCGTCCTCTTCACCACCTCCTTCTCCATTGAAACCACGAAACGGTGTTTCTCCTATTTCCCGTTACAGTGCTGTGAATGTGAACCCTCATATGGTGAGTAATTACAAAGACATGTTCGCTGAGTTGGTGATGAATTCTTTGGAGGGTTTGAGTTTCAACGAGGGTTCACCAGTTTCCGGTGCTGCAAAAGCACCCAACATGCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCCACAACAAAATCCTTTCATTGTTTCTTCTTTTGGCCTCGAAAATCAGCAGCAGCAACAGAACCAGTTTATTTATTCACCTCAGACACCGAAAAATAATGCGAAGTTCTATAGCAACAGATTCATGGGCAACGACAACAACAACAACAACAAGGTTGTCGGTGCTGCTGACGTTAATGGCCCAGATCTCGGGTGGGTGAACGAGTTGCTGATGTAA 1167 0.5133 MSSVCAEQHKFHPSHQLLSPKKALREIDIPPRKLLTRRAAAADMYSDETMLQKFLPSNDSDDDDPYSADHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRILPVTSSPSSNDMSCKKNLNKLLNHASKSNNNNCCLFCHCGGASSSASPTSTLFGMSHFSPPLSPSSSSSPPPSPLKPRNGVSPISRYSAVNVNPHMVSNYKDMFAELVMNSLEGLSFNEGSPVSGAAKAPNMPWLDVSLNCEEQPQQNPFIVSSFGLENQQQQQNQFIYSPQTPKNNAKFYSNRFMGNDNNNNNKVVGAADVNGPDLGWVNELLM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0799 388 MobiDBLite consensus disorder prediction 233 254 - -
Aed1g0799 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 135 IPR000571 GO:0046872
Aed1g0799 388 PANTHER UNKEMPT FAMILY MEMBER 26 387 IPR045234 -
Aed1g0799 388 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 387 - -
Aed1g0799 388 Gene3D - 109 174 - -
Aed1g0799 388 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Aed1g0799 388 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Aed1g0799 388 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Aed1g0799 388 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0799 Aed-Chr1 8850282 8851448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0799 66 248 C2H2 Transcription Factor Family AT5G12850 48.387 1.02e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g0799 zf-CCCH 5.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0799 K23047 - gmx:100801371 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0799 1 8850282 8851448 Aed1g0799 1 8850282 8851448 ECH