Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0791 ATGGCTTTGTTATTCAAGGATCCATCGAAGATTTCAGCGTATAGAGATAGAAGGTTCCCCGGATCGCAAGAGGAGTTCGAGCATGCGCTCGTGACCTCAACCACCGTTTATGTGGGGAACATGTCGTTTTACACGACAGAGGAGCAAGTTTACGAGCTCTTCACTCGTGCTGGAGAAATCAAAAAGATCATCATGGGTTTGGATAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCATTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACTATACTGGATGATCGTCCCATTCGAGTTGATTTTGATTGGGGATTCCAGGAAGGAAGACAATGGGGGCGTGGGAGGAGTGGTGGCCAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTAGGTTCTTTTCCAGCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAGGTCATGGTCATGGTCATGGTGGTTCCCATCGACATGGTAGAGATAATTACTATAATAGGAAGAGACACCGCGATGATGATCGCCACACACATGAGTCCTCAAAAAGAACTTCAGATCATGAATCTCGGAGGAACACTGACCATGAATCTAGACAGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGACGGGGTTAA 720 0.4486 MALLFKDPSKISAYRDRRFPGSQEEFEHALVTSTTVYVGNMSFYTTEEQVYELFTRAGEIKKIIMGLDKNTKTPCGFCFILYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQLVQKELEVQRQLVDYGAGSLGSFPAVIPTSYGRHGGGHGHGHGGSHRHGRDNYYNRKRHRDDDRHTHESSKRTSDHESRRNTDHESRQEKNPRFRESGDSDDDEEDDRKRRG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0791 239 CDD RRM_NCBP2 36 113 IPR034148 -
Aed1g0791 239 MobiDBLite consensus disorder prediction 158 239 - -
Aed1g0791 239 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 199 - -
Aed1g0791 239 SUPERFAMILY RNA-binding domain, RBD 22 127 IPR035979 GO:0003676
Aed1g0791 239 MobiDBLite consensus disorder prediction 173 239 - -
Aed1g0791 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Aed1g0791 239 SMART rrm1_1 35 108 IPR000504 GO:0003723
Aed1g0791 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Aed1g0791 239 Gene3D - 5 239 IPR012677 -
Aed1g0791 239 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 199 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0791 Aed-Chr1 8809768 8813600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0791 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 27.778 3.76e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0791 K12883 - gmx:100776217 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0791 1 8809768 8813600 Aed1g0791 1 8809768 8813600 ECH