Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0788 ATGGTCGAGCTTAAGCAGCAACCTCTGTTCTTTCTGTTTCTGCTTCTCTTTCTCTTTCTCTCTCTAACTCCCACACTCTCTCTAAACCAGGATGGTCTCTTCCTCCTCCAGGCTAAACTCCAACTCTCCGACCCCAATAACGCCCTCTCCGATTGGAACCGCCGCGACGCCACCCCATGCAACTGGACCGCCGTCACATGCGACGCCCCCGGTGGCGGTGTCGCCACCCTCGACCTCTCAAATCTCCAACTCGCCGGCCCCATCCCCGTCGCTGCGCTCTGCCGCCTCCCCTCGCTCTCCTCTCTCAACATCTCCAACAACAACCTCAATGCCACCCTCCCCGCCCCTGCGTTCTCCGCCTGCGCCGCCCTCCTCCACCTCAACCTTTCCCAGAACCTCCTCTCCGGCGACCTCCCCGCTACCCTCCCCAACCACCTCCCCAACCTCACCACCCTCGACCTCTCCTCCAACAACTTCTCCGGCGAGATTCCGGCGAGCTTCGGAAACTTCCGGCGACTCGAAACTCTCTCCCTCGTCAGCAACCTCCTCACCGGAACCATCCCCTCTTCCCTTAGCAACATTTCAACCCTCAAAACGCTTCACCTCGCTTACAACACCTTCGCCGGTCTCATTCCGAACGAGTTCGGAAACCTCACGAATCTCGAGGAGCTCTGGCTAGCAGATTGCAACCTTGTGGGTCTCATTCCGCGTTCTCTGGGGAAGTTAAGTAACCTTTTGAATCTCGACTTGTCGCAGAACTACCTCGTCGGAAACGTACCTGAACAACTCGTGTCGGGTTTGCACAGCATAGTTCAAATCGAACTCTACGAGAACTCTCTCTCCGGTGCGTTGCCACGCGCTGCGTTTGCCAACCTCACCGACTTAGAACGCTTCGATGCCTCCACGAACAAGTTGACTGGGACGATTCCGGAAGATTTGTGCGGATTGAAGAAACTCGGGTCGCTGAACCTGTACTCTAATAAACTCGAGGGTACTTTGCCAGAGAGTATATTGAACTCGGAAAACTTATATGAGTTGAAGTTGTTCAACAACTCGCTCACTGGGTCGTTGCCTCGTGGGTTGGGTAATAACTCAAAGTTGCAGTTTCTCGACGTTTCGTATAACCGGTTCTCCGGCGAGGTTTCGGCGGGGTTGTGTGGCGGGGGAAGGTTGGAGGAGCTGATTCTGATATACAATTCGTTTTCCGGGAGGATCCCCGAGAGTCTCGGGGAATGCAAGAGTTTGGAGAGGCTTCGGCTTAGGAATAATAACCTTTCTGGTGTTGTGCCTGAAGGGTTATGGGGTTTGCCCCATTTGTATTATTTGGAGCTTATTGAGAATTCTCTTTCTGGGTCGATTCCTAATTCGATTTCCAGGGCTTGGAATTTGTCAATTTTGTTAATTTCGGGGAATAAGTTTACTGGGTCGATTCCTGAGGGGATTGGGGAACTGGGTAATCTCGAAGAGTTTGTTGCTGATCATAATAGTCTTACTGGTCGGATTCCAAAAAGTGTGGTTAGGTTGAGTCAGTTGGATAGGCTTGTTCTCAGAGACAATCAACTTTTCGGAGAAATTCCTGTTGGAGTTGGTGGTTGGAAGAAGCTCAATGAGCTTGATTTGGCGAATAATAAGTTAAATGGGAGTATTCCTAAGGAGTTAGGTGACTCGCCTGTGCTTAATTATCTTGATCTTTCTGGGAATCAGTTCTCTGGTGAGATTCCAATTGAGCTGCAGAATTTGAAGCTTAATCTGTTGAATTTGTCGAACAATCAGCTTTCTGGGGTGATTCCTCCTCTTTATGCTAATGAGAATTATAGAAAGAGTTTTCTTGGGAATCTGGGTTTGTGTGGGGCTCTCTCTGGATTGTGTCCAAGCATGGGTGAGAGTGAGGGTAGGAGCAGGAAATATGCATGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATTGTGTTAATTGTTGGAGTGGCTTGGTTTTACTTCAAATTCCGGGACTTCAAGAAGATGAAAAAAGGGTTTCACTTTTCAAAGTGGAGGTCGTTTCACAAACTGGGGTTCAGTGAGTTTGAGATTGTTAAATTGCTAAGTGAGGATAATGTAATAGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTTCCCCTGAGTAATGGCGAGGTGGTGGCAGTGAAGAAATTGTGGGGAGCAAATAAGATGGGAAATAATGGATCCACTGATTCTGAGAAGGATGGTTTTGAAGTTGAGGTTGAAACATTGGGAAAGATTCGGCACAAGAATATTGTGAGGCTATGGTGTTGCTGCAACAGTAGAGATAGCAAACTCTTGAATGGAGAGGATCAAGTGATTGATCCAACTTTGGATATTCAATTTAAGGAAGAAATCAGCAAGGTACTCAGCGTGGGGCTTCATTGCACTAGCTCTCTTCCTATAACTCGCCCTTCAATGCGAACAGTGGTCAAATTGCTGAAGGAAGTAACTGAACTTCCCAAATCCTTAAGTGGAAAACTCTCTCCTCCTTATTTTCAGGAAGAGGCCACGGATATTGATCATCAGGGAAGCTTAGTTTGA 2562 0.4852 MVELKQQPLFFLFLLLFLFLSLTPTLSLNQDGLFLLQAKLQLSDPNNALSDWNRRDATPCNWTAVTCDAPGGGVATLDLSNLQLAGPIPVAALCRLPSLSSLNISNNNLNATLPAPAFSACAALLHLNLSQNLLSGDLPATLPNHLPNLTTLDLSSNNFSGEIPASFGNFRRLETLSLVSNLLTGTIPSSLSNISTLKTLHLAYNTFAGLIPNEFGNLTNLEELWLADCNLVGLIPRSLGKLSNLLNLDLSQNYLVGNVPEQLVSGLHSIVQIELYENSLSGALPRAAFANLTDLERFDASTNKLTGTIPEDLCGLKKLGSLNLYSNKLEGTLPESILNSENLYELKLFNNSLTGSLPRGLGNNSKLQFLDVSYNRFSGEVSAGLCGGGRLEELILIYNSFSGRIPESLGECKSLERLRLRNNNLSGVVPEGLWGLPHLYYLELIENSLSGSIPNSISRAWNLSILLISGNKFTGSIPEGIGELGNLEEFVADHNSLTGRIPKSVVRLSQLDRLVLRDNQLFGEIPVGVGGWKKLNELDLANNKLNGSIPKELGDSPVLNYLDLSGNQFSGEIPIELQNLKLNLLNLSNNQLSGVIPPLYANENYRKSFLGNLGLCGALSGLCPSMGESEGRSRKYAWIFRFIFVLAGIVLIVGVAWFYFKFRDFKKMKKGFHFSKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVPLSNGEVVAVKKLWGANKMGNNGSTDSEKDGFEVEVETLGKIRHKNIVRLWCCCNSRDSKLLNGEDQVIDPTLDIQFKEEISKVLSVGLHCTSSLPITRPSMRTVVKLLKEVTELPKSLSGKLSPPYFQEEATDIDHQGSLV 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0788 853 Gene3D Ribonuclease Inhibitor 190 266 IPR032675 -
Aed1g0788 853 Gene3D Ribonuclease Inhibitor 267 625 IPR032675 -
Aed1g0788 853 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Aed1g0788 853 Pfam Protein tyrosine and serine/threonine kinase 697 769 IPR001245 GO:0004672|GO:0006468
Aed1g0788 853 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Aed1g0788 853 Gene3D Phosphorylase Kinase; domain 1 675 776 - -
Aed1g0788 853 SUPERFAMILY RNI-like 77 426 - -
Aed1g0788 853 SUPERFAMILY Protein kinase-like (PK-like) 693 769 IPR011009 -
Aed1g0788 853 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 773 - -
Aed1g0788 853 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 774 825 - -
Aed1g0788 853 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 11 773 - -
Aed1g0788 853 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Aed1g0788 853 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 774 825 - -
Aed1g0788 853 SMART LRR_typ_2 146 169 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 436 460 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 242 266 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 316 340 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 412 435 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 508 532 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 218 241 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 533 556 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 267 291 IPR003591 -
Aed1g0788 853 SMART LRR_typ_2 96 120 IPR003591 -
Aed1g0788 853 ProSiteProfiles Protein kinase domain profile. 694 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0788 853 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Aed1g0788 853 Pfam Leucine rich repeat 171 231 IPR001611 GO:0005515
Aed1g0788 853 Pfam Leucine rich repeat 97 159 IPR001611 GO:0005515
Aed1g0788 853 SUPERFAMILY L domain-like 389 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0788 Aed-Chr1 8783966 8787130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0788 752 853 Receptor kinase-like Gene Family AT1G28440 45.455 3.50e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed1g0788 PK_Tyr_Ser-Thr 1.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0788 - - gmx:100778128 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0788 1 8783966 8787130 Aed1g0788 1 8783966 8787130 ECH