Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0762 ATGGAAGCTTTTGATGGTTTTCAAGTGAGTTGTGGTGTAATTGGAAGTGGGTATGGTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCTACTGTCAAATTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGAAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCAGGTGCTAAGAAGGACACAGTTTTCAGTTTTCTATCTAGATAA 282 0.4326 MEAFDGFQVSCGVIGSGYGSSSSLVLDKEKGELVEATVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKDTVFSFLSR 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0762 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 93 IPR011598 GO:0046983
Aed1g0762 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 83 IPR036638 GO:0046983
Aed1g0762 93 Gene3D - 48 89 IPR036638 GO:0046983
Aed1g0762 93 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 4 86 - -
Aed1g0762 93 Pfam Helix-loop-helix DNA-binding domain 56 85 IPR011598 GO:0046983
Aed1g0762 93 PANTHER TRANSCRIPTION FACTOR BHLH30 4 86 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0762 Aed-Chr1 8615067 8616295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0762 45 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56770 56.250 1.23e-07 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g0762 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0762 - - gmx:100783322 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0762 1 8615067 8616295 Aed1g0762 1 8615067 8616295 ECH