Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0744 ATGGCCTCTGAGCCGTTGGGGCCGCAGCAACCGCAGCAGCAGCAGCTTCAACCACCGCCGGAAGTGGCGGCTCCGCCGCAACAACCGGCGCAAGCGGAGAATGACCCGATGAAAGTGGACTCTCGCGGCGGCTCCAACGCCGGCGCCGAAAAGGAAATGTCAGCTCCTGTTGCAGATGGCAACACTGCCACTGGTCACATAATCTCAACCACAATTGGAGGCAAAAATGGTGAACCTAAACGAACCATCAGTTACATGGCCGAACGCCTTGTTGGCACTGGATCATTCGGAGTTGTTTTCCAGTATCTCATTTCACACCCTTGGGTTATGCTTTTTTATTTTTTACCTGAAACAAAGGCAAGGTGCTTGGAGACTGGGGAGGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGTGAGTTGCAGTTAATGTGCATGATGGATCACCCAAATATAATCTCCCTGAGGCACTATTTCTTCTCTACAACAAGTAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATGGCCCGTGTTACAGAGCACTACAATAGTATGAAACAGAGAATGCACTTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCGTATATCCATACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCGACTAACACACCAAGTCAAGCTCTGCGATTTTGGGAGTGCAAAAGTTCTGGTGGAGGGTGATTCAAACATTTCATACATATGTTCACGGTATTATCGTGCCCCAGAACTAATATTTGGTGCGACAGAATACACAACTTCTGTTGATATTTGGTCAGCTGGATGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCTTTGTTCCCAGGAGGAAATCAGGTTGACCAACTTGTGGAAATTATCAAGGTTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCAAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGTGAGCCCAATGCCCGGCTTCCCAATGGTCGTCCCCTGCCTCCACTTTTCAACTTTAAACAGGAATTAGATGGAGCGCCACCTGAACTGCTTCCTAAGCTCATCCCAGAGCACGTCAGGCGGCAAACTGGTCTTGGCTTCGTGTACTCGACGGAAACCCAAATGTAA 1338 0.4679 MASEPLGPQQPQQQQLQPPPEVAAPPQQPAQAENDPMKVDSRGGSNAGAEKEMSAPVADGNTATGHIISTTIGGKNGEPKRTISYMAERLVGTGSFGVVFQYLISHPWVMLFYFLPETKARCLETGEAVAIKKVLQDRRYKNRELQLMCMMDHPNIISLRHYFFSTTSRDELFLNLVMEYVPETMARVTEHYNSMKQRMHLIYVKLYTYQIFRGLAYIHTVPGICHRDVKPQNLLVDRLTHQVKLCDFGSAKVLVEGDSNISYICSRYYRAPELIFGATEYTTSVDIWSAGCVLAELLLGQPLFPGGNQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKQMPPEAIDLASRLLQYSPKLRYSAVEAMAHPFFDELREPNARLPNGRPLPPLFNFKQELDGAPPELLPKLIPEHVRRQTGLGFVYSTETQM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0744 445 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA-LIKE 49 437 - -
Aed1g0744 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Aed1g0744 445 Gene3D Transferase(Phosphotransferase) domain 1 183 430 - -
Aed1g0744 445 ProSiteProfiles Protein kinase domain profile. 85 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0744 445 MobiDBLite consensus disorder prediction 1 75 - -
Aed1g0744 445 CDD STKc_GSK3 80 390 IPR039192 -
Aed1g0744 445 Gene3D Phosphorylase Kinase; domain 1 82 182 - -
Aed1g0744 445 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 49 437 - -
Aed1g0744 445 Pfam Protein kinase domain 120 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0744 445 MobiDBLite consensus disorder prediction 12 26 - -
Aed1g0744 445 SUPERFAMILY Protein kinase-like (PK-like) 84 410 IPR011009 -
Aed1g0744 445 SMART serkin_6 85 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0744 Aed-Chr1 8482729 8487858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0744 91 390 Core Cell Cycle Gene Families AT3G48750 34.304 4.00e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Aed1g0744 Pkinase 7.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0744 K14502 - gmx:100788319 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0744 1 8482729 8487858 Aed1g0744 1 8482729 8487858 ECH
Aed1g0744 1 8482729 8487858 Aed5g0971 5 7526971 7531941 PCT